Detailed information NTG0800207

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RFN65_RS19500
• Genome accession: NZ_CP133703
• Coordinates: 3794602..3795723 (-)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain CP35
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3789602..3800723

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN65_RS19480 (RFN65_19480)	znuC	3790111..3790806 (-)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-
RFN65_RS19485 (RFN65_19485)	znuA	3790861..3791820 (-)	960	WP_309529891.1	metal ABC transporter substrate-binding protein	-
RFN65_RS19490 (RFN65_19490)	ycdG	3792008..3793693 (-)	1686	WP_063336012.1	alpha-glucosidase	-
RFN65_RS19495 (RFN65_19495)	ycdF	3793718..3794494 (-)	777	WP_063336011.1	SDR family oxidoreductase	-
RFN65_RS19500 (RFN65_19500)	rapF	3794602..3795723 (-)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
RFN65_RS19505 (RFN65_19505)	cwlK	3795846..3796349 (+)	504	WP_017695036.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
RFN65_RS19510 (RFN65_19510)	ycdC	3796357..3797718 (-)	1362	WP_063336042.1	YcdB/YcdC domain-containing protein	-
RFN65_RS19515 (RFN65_19515)	ycdB	3797905..3799326 (-)	1422	WP_309529892.1	YcdB/YcdC domain-containing protein	-
RFN65_RS19520 (RFN65_19520)	-	3799500..3799631 (+)	132	WP_003246334.1	hypothetical protein	-
RFN65_RS19525 (RFN65_19525)	ycdA	3799654..3800718 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=800207 RFN65_RS19500 WP_015715201.1 3794602..3795723(-) (rapF) [Bacillus subtilis strain CP35]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=800207 RFN65_RS19500 WP_015715201.1 3794602..3795723(-) (rapF) [Bacillus subtilis strain CP35]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CCTTGATGGAATTCCGCCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATCGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACTTGCTGGAATCCAGGCAGCTTCTTGCCGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCTGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405