Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   PX690_RS12970 Genome accession   NZ_CP119675
Coordinates   2466696..2467832 (-) Length   378 a.a.
NCBI ID   WP_106503125.1    Uniprot ID   -
Organism   Bacillus velezensis strain 160     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2456787..2502275 2466696..2467832 within 0


Gene organization within MGE regions


Location: 2456787..2502275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS12890 (PX690_12890) - 2457358..2457660 (+) 303 WP_041481750.1 hypothetical protein -
  PX690_RS12895 (PX690_12895) - 2457810..2458052 (-) 243 WP_041481751.1 hypothetical protein -
  PX690_RS12900 (PX690_12900) - 2458162..2458824 (+) 663 WP_014417662.1 hypothetical protein -
  PX690_RS12905 (PX690_12905) - 2460007..2460420 (-) 414 WP_041481752.1 hypothetical protein -
  PX690_RS12910 (PX690_12910) - 2460619..2460963 (-) 345 WP_014417663.1 hypothetical protein -
  PX690_RS12915 (PX690_12915) - 2460994..2461149 (-) 156 WP_014417664.1 hypothetical protein -
  PX690_RS12920 (PX690_12920) - 2461139..2461504 (-) 366 WP_041481753.1 hypothetical protein -
  PX690_RS12925 (PX690_12925) - 2461652..2462053 (-) 402 WP_276123156.1 hypothetical protein -
  PX690_RS12930 (PX690_12930) - 2462233..2462451 (+) 219 WP_014417667.1 helix-turn-helix transcriptional regulator -
  PX690_RS12935 (PX690_12935) - 2462499..2462780 (+) 282 WP_014417668.1 hypothetical protein -
  PX690_RS12940 (PX690_12940) - 2462832..2463077 (-) 246 WP_041481754.1 helix-turn-helix domain-containing protein -
  PX690_RS12945 (PX690_12945) - 2463578..2464294 (+) 717 WP_276123157.1 hypothetical protein -
  PX690_RS12950 (PX690_12950) - 2464330..2464638 (-) 309 WP_014417670.1 hypothetical protein -
  PX690_RS12955 (PX690_12955) - 2464651..2466075 (-) 1425 WP_276123158.1 lipase -
  PX690_RS12960 (PX690_12960) - 2466125..2466490 (+) 366 WP_014417672.1 DUF1433 domain-containing protein -
  PX690_RS12965 (PX690_12965) - 2466533..2466706 (-) 174 WP_169061491.1 hypothetical protein -
  PX690_RS12970 (PX690_12970) rapC 2466696..2467832 (-) 1137 WP_106503125.1 RapH N-terminal domain-containing protein Regulator
  PX690_RS12975 (PX690_12975) - 2468013..2468843 (-) 831 WP_014417674.1 SHOCT domain-containing protein -
  PX690_RS12980 (PX690_12980) - 2469008..2469937 (-) 930 WP_106503124.1 SH3 domain-containing protein -
  PX690_RS12985 (PX690_12985) - 2470028..2472667 (-) 2640 WP_276123159.1 phage tail protein -
  PX690_RS12990 (PX690_12990) - 2472682..2473437 (-) 756 WP_199022539.1 phage tail domain-containing protein -
  PX690_RS12995 (PX690_12995) - 2473486..2480550 (-) 7065 Protein_2570 phage tail tape measure protein -
  PX690_RS13000 (PX690_13000) - 2481295..2482428 (-) 1134 WP_276123160.1 GIY-YIG nuclease family protein -
  PX690_RS13005 (PX690_13005) - 2482603..2483481 (+) 879 WP_276123161.1 tyrosine-type recombinase/integrase -
  PX690_RS13010 (PX690_13010) - 2483567..2485060 (+) 1494 WP_276123162.1 hypothetical protein -
  PX690_RS13015 (PX690_13015) - 2485168..2485335 (-) 168 WP_169061554.1 hypothetical protein -
  PX690_RS13020 (PX690_13020) - 2485353..2485769 (-) 417 WP_276123163.1 hypothetical protein -
  PX690_RS13025 (PX690_13025) - 2485769..2486254 (-) 486 WP_106503057.1 hypothetical protein -
  PX690_RS13030 (PX690_13030) - 2486251..2486409 (-) 159 WP_276123164.1 XkdX family protein -
  PX690_RS13035 (PX690_13035) - 2486410..2486679 (-) 270 WP_174747583.1 hypothetical protein -
  PX690_RS13040 (PX690_13040) - 2486694..2488001 (-) 1308 WP_276123165.1 hypothetical protein -
  PX690_RS13045 (PX690_13045) - 2488040..2488609 (-) 570 WP_254634440.1 HNH endonuclease -
  PX690_RS13050 (PX690_13050) - 2488620..2488814 (-) 195 WP_014471790.1 hypothetical protein -
  PX690_RS13055 (PX690_13055) - 2489431..2492277 (-) 2847 WP_276123166.1 hypothetical protein -
  PX690_RS13060 (PX690_13060) - 2492295..2494199 (-) 1905 WP_105322071.1 hypothetical protein -
  PX690_RS13065 (PX690_13065) - 2494514..2495200 (+) 687 WP_276123167.1 AimR family lysis-lysogeny pheromone receptor -
  PX690_RS13070 (PX690_13070) - 2495520..2495642 (+) 123 WP_134998052.1 lysogeny pheromone AimP family peptide -
  PX690_RS13075 (PX690_13075) - 2495757..2496005 (+) 249 WP_259429618.1 hypothetical protein -
  PX690_RS13080 (PX690_13080) - 2496119..2497000 (+) 882 WP_276123168.1 hypothetical protein -
  PX690_RS13085 (PX690_13085) - 2497015..2497515 (+) 501 WP_276123169.1 hypothetical protein -
  PX690_RS13090 (PX690_13090) - 2497543..2498376 (+) 834 WP_276123170.1 glycosyl transferase family 2 -
  PX690_RS13095 (PX690_13095) - 2498409..2499329 (+) 921 WP_276123171.1 hypothetical protein -
  PX690_RS13100 (PX690_13100) - 2499317..2499853 (+) 537 WP_276123172.1 hypothetical protein -
  PX690_RS13105 (PX690_13105) - 2499850..2500299 (+) 450 WP_276123173.1 hypothetical protein -
  PX690_RS13110 (PX690_13110) - 2500566..2502275 (+) 1710 WP_106503064.1 recombinase family protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 44579.90 Da        Isoelectric Point: 4.9328

>NTDB_id=800198 PX690_RS12970 WP_106503125.1 2466696..2467832(-) (rapC) [Bacillus velezensis strain 160]
MKQLISSSKVGVKINEWYKYIRMFSVPDAEVLKSEVEQEINAMEENQDLLLYYSLMCFRHQLMLDYLEPKTMNEERPEIS
DLLEKIESSQAKLKGILEYYFNFFRGMYEFEEYEYLKAISFYKQAEKKLSLVADEIERAEFHYKVAEIYYHMKQTHMSMH
HIVQAIESYRAHETYSVREIQCSFVIGLNYLDMEYPEKAIPHFQKAYKKALEIDMPRLAGSALYNLGISSFSEEKFDEAI
EYFKEGVLIYEQNGYEHANRLLDILFMLAKTNFKVNKKTDGTAAYKHGLSLAKNLNDEVLTKMFDSLNALYIDDNKETLN
EILAYLEFKTMFSDVEDLATDAAKYYTKNEDHKAAGLFYEKVLYAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=800198 PX690_RS12970 WP_106503125.1 2466696..2467832(-) (rapC) [Bacillus velezensis strain 160]
TTGAAACAGTTAATCTCCTCATCCAAAGTCGGCGTGAAGATTAATGAGTGGTACAAGTATATTCGCATGTTTAGTGTTCC
TGATGCAGAGGTGCTGAAATCAGAAGTGGAACAAGAAATAAACGCTATGGAAGAAAATCAGGATTTATTGTTGTACTATT
CCCTCATGTGTTTTAGACATCAATTAATGCTTGATTATCTTGAACCAAAAACCATGAATGAAGAACGACCTGAGATTTCA
GACTTATTAGAAAAGATCGAAAGTAGCCAAGCTAAATTGAAAGGAATTCTTGAATATTACTTTAACTTTTTCCGTGGGAT
GTATGAATTTGAAGAATACGAATATCTTAAAGCGATAAGTTTTTACAAACAAGCGGAAAAGAAGTTGTCACTTGTAGCCG
ACGAAATTGAGCGAGCGGAGTTTCATTACAAAGTCGCTGAAATTTATTATCACATGAAACAAACACACATGTCGATGCAC
CATATTGTTCAAGCAATCGAAAGCTACAGAGCGCATGAAACCTATTCTGTTAGAGAAATTCAATGTTCTTTTGTTATTGG
TCTAAATTATTTAGATATGGAGTACCCAGAAAAGGCTATCCCTCATTTTCAAAAAGCTTATAAAAAAGCACTTGAAATTG
ATATGCCAAGATTAGCCGGATCCGCTCTATATAATTTAGGGATTTCCTCTTTTTCTGAAGAAAAGTTCGACGAGGCTATT
GAGTATTTCAAAGAAGGAGTATTGATCTATGAGCAGAACGGATATGAACATGCTAACCGCTTATTAGACATTCTTTTCAT
GTTAGCGAAAACGAACTTTAAGGTAAATAAGAAAACTGACGGAACAGCTGCTTATAAACATGGACTGTCATTGGCTAAAA
ACTTAAATGATGAAGTATTAACCAAAATGTTTGATTCCCTGAATGCCCTTTACATTGACGATAACAAAGAAACACTAAAT
GAGATTCTTGCTTATTTAGAATTTAAAACAATGTTTTCAGATGTGGAGGACTTAGCAACCGACGCAGCGAAGTATTATAC
AAAAAATGAAGACCATAAAGCGGCTGGATTATTTTATGAGAAAGTGCTTTATGCCCAAAAACAAATCCAGAGAGGGGATT
GTCTTTATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_8)

(222-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

48.148

100

0.481
  rapF Bacillus subtilis subsp. subtilis str. 168

44.882

100

0.452