Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PX690_RS12665 Genome accession   NZ_CP119675
Coordinates   2372281..2372565 (+) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus velezensis strain 160     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2367281..2377565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PX690_RS12645 (PX690_12645) - 2368528..2369436 (+) 909 WP_276123150.1 ketopantoate reductase family protein -
  PX690_RS12650 (PX690_12650) - 2369466..2370698 (-) 1233 WP_044053170.1 aminopeptidase -
  PX690_RS12655 (PX690_12655) - 2370799..2370933 (-) 135 WP_003154559.1 protein YkpC -
  PX690_RS12660 (PX690_12660) mreBH 2371005..2372012 (-) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  PX690_RS12665 (PX690_12665) abrB 2372281..2372565 (+) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  PX690_RS12670 (PX690_12670) - 2372738..2374042 (+) 1305 WP_014304932.1 ATP-binding protein -
  PX690_RS12675 (PX690_12675) - 2374044..2374871 (+) 828 WP_003154555.1 gamma-glutamylcyclotransferase family protein -
  PX690_RS12680 (PX690_12680) ktrC 2374912..2375577 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  PX690_RS12685 (PX690_12685) ade 2375726..2377459 (+) 1734 WP_058905991.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=800197 PX690_RS12665 WP_024085249.1 2372281..2372565(+) (abrB) [Bacillus velezensis strain 160]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=800197 PX690_RS12665 WP_024085249.1 2372281..2372565(+) (abrB) [Bacillus velezensis strain 160]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543