Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   RFN65_RS11685 Genome accession   NZ_CP133703
Coordinates   2299011..2299442 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain CP35     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2294011..2304442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS11675 (RFN65_11675) hexA 2295495..2298071 (-) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene
  RFN65_RS11680 (RFN65_11680) cotE 2298204..2298749 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  RFN65_RS11685 (RFN65_11685) ymcA 2299011..2299442 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  RFN65_RS11690 (RFN65_11690) miaB 2299444..2300973 (-) 1530 WP_015483238.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  RFN65_RS11695 (RFN65_11695) kbl 2301121..2302299 (-) 1179 WP_015383694.1 glycine C-acetyltransferase -
  RFN65_RS11700 (RFN65_11700) tdh 2302312..2303355 (-) 1044 WP_015483237.1 L-threonine 3-dehydrogenase -
  RFN65_RS11705 (RFN65_11705) spoVS 2303621..2303881 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=800144 RFN65_RS11685 WP_003231834.1 2299011..2299442(-) (ymcA) [Bacillus subtilis strain CP35]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=800144 RFN65_RS11685 WP_003231834.1 2299011..2299442(-) (ymcA) [Bacillus subtilis strain CP35]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1