Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   RFN65_RS10410 Genome accession   NZ_CP133703
Coordinates   1979543..1981318 (+) Length   591 a.a.
NCBI ID   WP_309530283.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1974543..1986318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS10360 (RFN65_10360) yozC 1974980..1975183 (+) 204 WP_003231245.1 DUF6501 family protein -
  RFN65_RS10365 (RFN65_10365) yozO 1975537..1975881 (+) 345 WP_003220141.1 PH domain-containing protein -
  RFN65_RS10370 (RFN65_10370) - 1975966..1976199 (-) 234 WP_003231251.1 hypothetical protein -
  RFN65_RS10375 (RFN65_10375) - 1976204..1976467 (-) 264 WP_004399338.1 hypothetical protein -
  RFN65_RS10380 (RFN65_10380) yocM 1976534..1977010 (+) 477 WP_003231255.1 salt stress-responsive protein YocM -
  RFN65_RS10385 (RFN65_10385) - 1976997..1977224 (-) 228 WP_015383862.1 hypothetical protein -
  RFN65_RS10390 (RFN65_10390) - 1977302..1977634 (+) 333 WP_015383861.1 hypothetical protein -
  RFN65_RS10395 (RFN65_10395) stpP 1977709..1978200 (+) 492 WP_014477068.1 TraR/DksA family transcriptional regulator -
  RFN65_RS10400 (RFN65_10400) azoJ 1978352..1978978 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  RFN65_RS10410 (RFN65_10410) recQ 1979543..1981318 (+) 1776 WP_309530283.1 DNA helicase RecQ Machinery gene
  RFN65_RS10415 (RFN65_10415) walN 1981566..1982429 (+) 864 WP_047182733.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  RFN65_RS10420 (RFN65_10420) desR 1983024..1983623 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  RFN65_RS10425 (RFN65_10425) desK 1983642..1984754 (-) 1113 WP_015383857.1 two-component sensor histidine kinase DesK -
  RFN65_RS10430 (RFN65_10430) desE 1984874..1985932 (-) 1059 WP_309530284.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67319.84 Da        Isoelectric Point: 6.4569

>NTDB_id=800138 RFN65_RS10410 WP_309530283.1 1979543..1981318(+) (recQ) [Bacillus subtilis strain CP35]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSTEFIRILQGIVVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRDNLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGHCGNCADT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRTKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=800138 RFN65_RS10410 WP_309530283.1 1979543..1981318(+) (recQ) [Bacillus subtilis strain CP35]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGAATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCACAGAGTTTATCCGGATTTTGCAGGGTATAGTTGTTC
CTTTGGTCGCAATAGACGAGGCGCACTGTATTTCTCAATGGGGCCATGATTTTAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCAGAGATAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACATTGCGGAAACTGTGCCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAAAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGCGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAACAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)

RQC domain (RQC)

(403-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

98.985

100

0.99