Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   P3K65_RS06685 Genome accession   NZ_CP119629
Coordinates   1301295..1301618 (-) Length   107 a.a.
NCBI ID   WP_000578880.1    Uniprot ID   A0A2A7DD22
Organism   Bacillus paranthracis strain Bc006     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1296295..1306618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3K65_RS06660 (P3K65_06660) - 1296544..1297830 (+) 1287 WP_000247654.1 D-alanyl-D-alanine carboxypeptidase family protein -
  P3K65_RS06665 (P3K65_06665) sipW 1298016..1298585 (+) 570 WP_000767809.1 signal peptidase I SipW -
  P3K65_RS06670 (P3K65_06670) - 1298648..1299235 (+) 588 WP_000172834.1 CalY family protein -
  P3K65_RS06675 (P3K65_06675) - 1299396..1300202 (+) 807 WP_000917715.1 DUF4047 domain-containing protein -
  P3K65_RS06680 (P3K65_06680) calY 1300626..1301219 (+) 594 WP_000053740.1 biofilm matrix protein CalY -
  P3K65_RS06685 (P3K65_06685) sinR 1301295..1301618 (-) 324 WP_000578880.1 helix-turn-helix domain-containing protein Regulator
  P3K65_RS06690 (P3K65_06690) - 1301698..1301832 (-) 135 WP_000276217.1 anti-repressor SinI family protein -
  P3K65_RS06695 (P3K65_06695) inhA1 1302174..1304564 (+) 2391 WP_276105260.1 M6 family metalloprotease immune inhibitor InhA1 -
  P3K65_RS06700 (P3K65_06700) - 1304736..1306103 (+) 1368 WP_000116809.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12386.21 Da        Isoelectric Point: 8.5614

>NTDB_id=800122 P3K65_RS06685 WP_000578880.1 1301295..1301618(-) (sinR) [Bacillus paranthracis strain Bc006]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKENHLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=800122 P3K65_RS06685 WP_000578880.1 1301295..1301618(-) (sinR) [Bacillus paranthracis strain Bc006]
ATGATTGGAGAACGTATAAAACGCCTGCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATTGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAACAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCCGGCGTCTCCAAAGAACAGTTTCGTGAATTTCTTGAATTTACAAAATGGAAGCAAGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(72-99)

Helix-turn-helix (HTH_3)

(6-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7DD22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692