Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN65_RS07860 Genome accession   NZ_CP133703
Coordinates   1542995..1544122 (+) Length   375 a.a.
NCBI ID   WP_038429342.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1537995..1549122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS07830 (RFN65_07830) - 1538731..1538940 (+) 210 Protein_1536 phage portal protein -
  RFN65_RS07835 (RFN65_07835) skhD 1538986..1539408 (+) 423 WP_309530216.1 holin family protein -
  RFN65_RS07840 (RFN65_07840) cwlA 1539453..1540270 (+) 818 Protein_1538 N-acetylmuramoyl-L-alanine amidase -
  RFN65_RS07845 (RFN65_07845) - 1540307..1540609 (-) 303 WP_063335464.1 contact-dependent growth inhibition system immunity protein -
  RFN65_RS07850 (RFN65_07850) - 1540620..1540910 (-) 291 WP_061047063.1 contact-dependent growth inhibition system immunity protein -
  RFN65_RS07855 (RFN65_07855) - 1540929..1542809 (-) 1881 WP_309530217.1 T7SS effector LXG polymorphic toxin -
  RFN65_RS07860 (RFN65_07860) rapC 1542995..1544122 (+) 1128 WP_038429342.1 Rap family tetratricopeptide repeat protein Regulator
  RFN65_RS07865 (RFN65_07865) - 1544666..1545091 (-) 426 WP_080467336.1 EVE domain-containing protein -
  RFN65_RS07870 (RFN65_07870) - 1545096..1545488 (-) 393 WP_046340253.1 rhodanese-like domain-containing protein -
  RFN65_RS07875 (RFN65_07875) - 1545509..1545928 (-) 420 WP_015483464.1 MarR family winged helix-turn-helix transcriptional regulator -
  RFN65_RS07880 (RFN65_07880) yrkK 1546251..1546727 (+) 477 WP_309530218.1 HXXEE domain-containing protein -
  RFN65_RS07885 (RFN65_07885) yrkL 1546974..1547498 (+) 525 WP_003246192.1 NAD(P)H-dependent oxidoreductase -
  RFN65_RS07890 (RFN65_07890) - 1548122..1548361 (-) 240 WP_196210915.1 YesK family protein -
  RFN65_RS07895 (RFN65_07895) - 1548757..1549092 (+) 336 WP_063335462.1 DUF3139 domain-containing protein -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 44163.39 Da        Isoelectric Point: 6.0289

>NTDB_id=800115 RFN65_RS07860 WP_038429342.1 1542995..1544122(+) (rapC) [Bacillus subtilis strain CP35]
MNPVLSSSEVGVKINEWYKMIRQFSVPDAEILKAEVEQEIQRMEEDEYLLIYFSLMKFRHQLMLDYLEPVTTRIRPTIEE
LLEKIETSNKGISGLLSYYSLFFRGMYEFDKKQYMKAIYYYREAEKQLIHVPDEIERAEFHFKLAEAYYGMKQSHVSMHH
VKQALDIYNQYELYKVRKVQCMFVISGNYTDFKHYEKSQPHLEKALKLSRELNNKRLISSALYNLGTNFADSGDYEQAEV
YIKQAVEITEKEKLTNLPHSLFSYAKILFKQGKMNEAIQVSKKGLSAALYQGDELFAKLQGYLKALYVDAVDQQGVNQTI
EYLEKNKNYSYIEDIACETAAAYANSKEFETSYVYHQKMLETQTQIQRGECLYDF

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=800115 RFN65_RS07860 WP_038429342.1 1542995..1544122(+) (rapC) [Bacillus subtilis strain CP35]
GTGAATCCGGTTTTATCATCGTCAGAAGTTGGCGTAAAGATCAATGAATGGTATAAAATGATACGTCAATTTAGTGTCCC
GGATGCAGAGATTTTAAAGGCAGAGGTGGAGCAAGAAATCCAACGGATGGAGGAAGATGAGTATTTACTCATTTACTTCT
CCCTAATGAAATTCCGTCATCAGCTCATGTTAGATTATTTGGAACCCGTAACTACACGTATAAGACCAACTATTGAGGAA
CTTCTTGAAAAAATTGAGACTTCAAATAAAGGCATATCTGGTCTGTTGTCGTATTATTCTCTGTTTTTCAGAGGGATGTA
CGAGTTTGATAAGAAGCAATACATGAAAGCTATCTACTATTATAGAGAAGCCGAAAAGCAGCTTATACATGTCCCTGATG
AGATCGAAAGGGCAGAGTTTCATTTTAAGTTAGCTGAAGCATATTATGGTATGAAGCAAAGTCATGTGTCTATGCATCAC
GTTAAACAAGCATTGGATATTTATAATCAATATGAACTTTATAAGGTGCGAAAAGTTCAATGTATGTTTGTTATCTCAGG
GAATTATACTGATTTTAAACATTACGAAAAAAGTCAGCCGCATCTTGAAAAGGCATTAAAGTTATCTAGGGAATTGAATA
ACAAAAGGTTGATTAGTTCTGCACTATATAATTTAGGCACTAATTTTGCTGACAGTGGTGATTACGAGCAGGCGGAAGTA
TACATAAAGCAAGCAGTGGAGATTACAGAAAAAGAAAAGCTCACAAACTTGCCACATTCTTTATTTTCTTATGCAAAAAT
CCTTTTTAAACAAGGAAAAATGAATGAGGCTATCCAAGTAAGTAAGAAAGGTTTGTCAGCAGCTCTTTATCAAGGTGATG
AGCTTTTCGCAAAATTACAGGGATATTTAAAAGCTCTTTATGTCGATGCAGTGGACCAACAAGGTGTTAATCAAACAATA
GAATACTTAGAAAAAAATAAGAACTATTCATATATTGAAGACATTGCCTGTGAGACCGCAGCTGCTTACGCAAACTCAAA
AGAATTTGAAACATCCTATGTATATCATCAGAAAATGCTTGAGACTCAAACACAAATTCAAAGGGGAGAATGCCTGTATG
ACTTTTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(195-251)

Tetratricopeptide repeat (TPR_8)

(259-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

100

0.445
  rapF Bacillus subtilis subsp. subtilis str. 168

39.683

100

0.4