Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RFN65_RS05925 Genome accession   NZ_CP133703
Coordinates   1167156..1167866 (+) Length   236 a.a.
NCBI ID   WP_047183044.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1162156..1172866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS05905 (RFN65_05905) ytfP 1162636..1163898 (-) 1263 WP_309530311.1 NAD(P)/FAD-dependent oxidoreductase -
  RFN65_RS05910 (RFN65_05910) murJ 1164101..1165735 (+) 1635 WP_014480588.1 lipid II flippase MurJ -
  RFN65_RS05915 (RFN65_05915) rsuA 1165804..1166523 (+) 720 WP_063335782.1 pseudouridine synthase -
  RFN65_RS05920 (RFN65_05920) ytzE 1166645..1166866 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  RFN65_RS05925 (RFN65_05925) pptA 1167156..1167866 (+) 711 WP_047183044.1 ABC transporter ATP-binding protein Regulator
  RFN65_RS05930 (RFN65_05930) ythQ 1167863..1169020 (+) 1158 WP_063335783.1 ABC transporter permease -
  RFN65_RS05935 (RFN65_05935) pbuO 1169060..1170358 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  RFN65_RS05940 (RFN65_05940) pepV 1170455..1171846 (+) 1392 WP_063335784.1 dipeptidase PepV -
  RFN65_RS05945 (RFN65_05945) cysK 1171880..1172815 (-) 936 WP_015384397.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26546.63 Da        Isoelectric Point: 5.5930

>NTDB_id=800099 RFN65_RS05925 WP_047183044.1 1167156..1167866(+) (pptA) [Bacillus subtilis strain CP35]
MTSLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=800099 RFN65_RS05925 WP_047183044.1 1167156..1167866(+) (pptA) [Bacillus subtilis strain CP35]
TTGACAAGTTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTTTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATCGAAGAGAGGGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432