Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RFN65_RS05740 Genome accession   NZ_CP133703
Coordinates   1125385..1126080 (+) Length   231 a.a.
NCBI ID   WP_015483587.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1120385..1131080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS05715 (RFN65_05715) ytrB 1120413..1121291 (+) 879 WP_004398506.1 ABC transporter ATP-binding protein YtrB -
  RFN65_RS05720 (RFN65_05720) ytrC 1121285..1122271 (+) 987 WP_015483589.1 ABC transporter permease YtrC -
  RFN65_RS05725 (RFN65_05725) ytrD 1122301..1123278 (+) 978 WP_309530149.1 ABC transporter permease YtrD -
  RFN65_RS05730 (RFN65_05730) ytrE 1123293..1123988 (+) 696 WP_014477726.1 ABC transporter ATP-binding protein YtrE -
  RFN65_RS05735 (RFN65_05735) ytrF 1123978..1125288 (+) 1311 WP_015251399.1 ABC transporter permease YtrF -
  RFN65_RS05740 (RFN65_05740) braR 1125385..1126080 (+) 696 WP_015483587.1 two-component response regulator BceR Regulator
  RFN65_RS05745 (RFN65_05745) bceS 1126073..1127077 (+) 1005 WP_015384427.1 two-component sensor histidine kinase BceS -
  RFN65_RS05750 (RFN65_05750) bceA 1127179..1127940 (+) 762 WP_003229137.1 bacitracin ABC transporter ATP-binding protein BceA -
  RFN65_RS05755 (RFN65_05755) bceB 1127930..1129870 (+) 1941 WP_309530150.1 bacitracin ABC transporter permease BceB -
  RFN65_RS05760 (RFN65_05760) yttA 1129907..1130653 (-) 747 WP_100506425.1 LMBR1 domain-containing protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26921.82 Da        Isoelectric Point: 5.3731

>NTDB_id=800098 RFN65_RS05740 WP_015483587.1 1125385..1126080(+) (braR) [Bacillus subtilis strain CP35]
MFKLLLIEDDESLFHEIKDRLTGWSYDVYGIQDFSQVLQEFAAVNPDCVIIDVQLPKFDGFHWCRLIRSRSNVPILFLSS
RDHPADMVMSMQLGADDFIQKPFHFDVLIAKIQAMFRRVHHYNTEPNTIKTWCGAAVDAEQNLVSNDKGSVELTKNEMFI
LKQLIEQKNKIVSREELIRSLWNDERFVSDNTLTVNVNRLRKKLDVLQLGAYIETKVGQGYIAKEEDKFYD

Nucleotide


Download         Length: 696 bp        

>NTDB_id=800098 RFN65_RS05740 WP_015483587.1 1125385..1126080(+) (braR) [Bacillus subtilis strain CP35]
TTGTTTAAACTTTTGCTGATTGAAGATGATGAATCGCTGTTTCATGAAATCAAGGATCGTTTAACGGGATGGTCCTATGA
TGTATACGGCATTCAGGATTTCAGTCAGGTGCTGCAGGAATTTGCGGCGGTTAATCCTGATTGTGTCATTATTGATGTAC
AGCTGCCTAAATTTGACGGCTTTCATTGGTGCCGGCTGATCCGCTCCCGGTCAAATGTTCCGATTCTCTTTTTATCCTCC
CGGGATCATCCTGCTGATATGGTGATGTCCATGCAGCTCGGGGCAGATGACTTTATTCAAAAGCCATTTCATTTTGATGT
GCTGATCGCGAAAATCCAAGCGATGTTCCGGCGTGTGCACCATTATAATACGGAGCCGAATACGATTAAAACCTGGTGCG
GCGCTGCTGTAGACGCGGAGCAGAACCTCGTCAGCAATGACAAAGGATCTGTTGAACTGACCAAAAATGAAATGTTCATT
CTAAAACAATTAATAGAGCAAAAAAACAAGATCGTCAGCCGGGAAGAGCTGATCAGAAGCTTGTGGAACGATGAGCGTTT
TGTTAGTGATAATACGCTGACCGTCAATGTCAATCGCCTGCGAAAAAAACTGGACGTCCTGCAGCTTGGTGCATATATCG
AGACAAAGGTGGGCCAGGGCTACATCGCGAAGGAAGAGGACAAGTTCTATGATTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(150-222)

Response regulator receiver domain (Response_reg)

(5-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

39.545

95.238

0.377