Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RFN65_RS00755 Genome accession   NZ_CP133703
Coordinates   140276..140965 (+) Length   229 a.a.
NCBI ID   WP_015483924.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP35     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 135276..145965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN65_RS00735 (RFN65_00735) iolG 136430..137464 (+) 1035 WP_309529972.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -
  RFN65_RS00740 (RFN65_00740) iolH 137484..138353 (+) 870 WP_014478480.1 sugar phosphate isomerase/epimerase family protein -
  RFN65_RS00745 (RFN65_00745) iolI 138439..139275 (+) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  RFN65_RS00750 (RFN65_00750) iolJ 139296..140168 (+) 873 WP_309529973.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  RFN65_RS00755 (RFN65_00755) braR 140276..140965 (+) 690 WP_015483924.1 two-component system response regulator YxdJ Regulator
  RFN65_RS00760 (RFN65_00760) yxdK 140962..141939 (+) 978 WP_309529974.1 two-component system sensor histidine kinase YxdK -
  RFN65_RS00765 (RFN65_00765) yxdL 142083..142856 (+) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  RFN65_RS00770 (RFN65_00770) yxdM 142831..144699 (+) 1869 WP_047183453.1 ABC transporter permease YxdM -
  RFN65_RS00775 (RFN65_00775) yxeA 144713..145060 (+) 348 WP_015715011.1 YxeA family protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26630.37 Da        Isoelectric Point: 4.8564

>NTDB_id=800073 RFN65_RS00755 WP_015483924.1 140276..140965(+) (braR) [Bacillus subtilis strain CP35]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTTVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=800073 RFN65_RS00755 WP_015483924.1 140276..140965(+) (braR) [Bacillus subtilis strain CP35]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAACTGTTCTTGATGTCTTTTTGCGGGAGAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCAATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTAATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTCCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATCGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCACAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406