Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   L6497_RS20355 Genome accession   NZ_AP022927
Coordinates   3956361..3957155 (-) Length   264 a.a.
NCBI ID   WP_003161566.1    Uniprot ID   P52928
Organism   Bacillus cereus strain J2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3951361..3962155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6497_RS20335 (BCJMU02_4018) - 3951953..3952252 (-) 300 WP_000225772.1 hypothetical protein -
  L6497_RS20340 (BCJMU02_4019) - 3952364..3953137 (-) 774 WP_061681248.1 hypothetical protein -
  L6497_RS20345 (BCJMU02_4021) - 3953728..3954090 (-) 363 WP_236792771.1 GIY-YIG nuclease family protein -
  L6497_RS30090 - 3954607..3954732 (-) 126 WP_272884625.1 hypothetical protein -
  L6497_RS20350 (BCJMU02_4022) - 3955233..3956207 (-) 975 WP_236792772.1 tyrosine-type recombinase/integrase -
  L6497_RS20355 (BCJMU02_4023) spo0A 3956361..3957155 (-) 795 WP_003161566.1 sporulation transcription factor Spo0A Regulator
  L6497_RS20360 (BCJMU02_4024) spoIVB 3957443..3958741 (-) 1299 WP_002054681.1 SpoIVB peptidase -
  L6497_RS20365 (BCJMU02_4025) recN 3958860..3960599 (-) 1740 WP_000947754.1 DNA repair protein RecN Machinery gene
  L6497_RS20370 (BCJMU02_4026) argR 3960867..3961316 (-) 450 WP_001032581.1 arginine repressor ArgR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29440.17 Da        Isoelectric Point: 7.4718

>NTDB_id=80007 L6497_RS20355 WP_003161566.1 3956361..3957155(-) (spo0A) [Bacillus cereus strain J2]
MEKIKVCLVDDNKELVSMLESYVAAQDDMEVIGTAYNGQECLNLLKDKQPDVLVLDIIMPHLDGLAVLEKMRHIERLRQP
SVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLTSHIRQVSGKANATIKRPLPSFRSATTVDGKPKNLDASITSIIHE
IGVPAHIKGYMYLREAISMVYNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVSMS
KAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 795 bp        

>NTDB_id=80007 L6497_RS20355 WP_003161566.1 3956361..3957155(-) (spo0A) [Bacillus cereus strain J2]
GTGGAGAAAATTAAAGTATGTCTTGTGGATGATAATAAAGAATTAGTATCAATGCTAGAGAGTTATGTAGCTGCTCAAGA
TGATATGGAAGTAATCGGTACTGCTTATAATGGTCAAGAGTGTTTAAATTTATTAAAAGATAAGCAGCCGGATGTACTCG
TATTGGATATTATTATGCCACATTTAGATGGTTTAGCTGTACTAGAGAAAATGCGACATATTGAAAGGTTAAGACAGCCT
AGCGTAATTATGTTGACAGCATTTGGACAAGAAGATGTGACGAAAAAAGCAGTTGACTTAGGTGCTTCATATTTCATATT
AAAACCATTTGATATGGAAAATTTAACGAGTCATATTCGTCAAGTGAGCGGTAAGGCGAACGCTACTATTAAACGTCCAC
TGCCATCTTTCCGATCAGCAACAACAGTAGATGGAAAACCGAAAAATTTAGACGCGAGCATTACGAGTATCATTCATGAA
ATTGGTGTGCCTGCTCATATTAAAGGGTACATGTACTTAAGGGAAGCAATTTCTATGGTGTACAATGACATCGAATTACT
TGGATCTATTACGAAAGTATTGTATCCAGATATCGCGAAGAAATATAATACAACAGCAAGCCGCGTTGAGCGTGCAATCC
GTCACGCAATTGAAGTAGCATGGAGTCGTGGGAATATTGATTCTATTTCGTCCTTATTCGGTTATACAGTATCCATGTCA
AAAGCAAAACCTACGAACTCTGAGTTTATTGCAATGGTTGCGGATAAGTTGAGACTTGAACATAAAGCTTCATAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(154-257)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P52928

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

80.899

100

0.818

Multiple sequence alignment