Detailed information NTG0799928

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: P1K87_RS17780
• Genome accession: NZ_CP119596
• Coordinates: 3594016..3595161 (+)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain MG-2
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3589016..3600161

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P1K87_RS17760 (P1K87_17760)	-	3589913..3590341 (-)	429	WP_032869448.1	DUF1934 domain-containing protein	-
P1K87_RS17765 (P1K87_17765)	-	3590495..3591007 (+)	513	Protein_3444	bacteriocin biosynthesis protein AlbG	-
P1K87_RS17770 (P1K87_17770)	-	3591014..3592390 (-)	1377	WP_032875890.1	YncE family protein	-
P1K87_RS17775 (P1K87_17775)	-	3592430..3593785 (-)	1356	WP_032875887.1	YncE family protein	-
P1K87_RS17780 (P1K87_17780)	rapF	3594016..3595161 (+)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
P1K87_RS17785 (P1K87_17785)	-	3595145..3595264 (+)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
P1K87_RS17790 (P1K87_17790)	speB	3595387..3596259 (-)	873	WP_032875884.1	agmatinase	-
P1K87_RS17795 (P1K87_17795)	speE	3596318..3597148 (-)	831	WP_003151052.1	spermidine synthase	-
P1K87_RS17800 (P1K87_17800)	-	3597348..3599420 (+)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
P1K87_RS17805 (P1K87_17805)	-	3599445..3599878 (-)	434	Protein_3452	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=799928 P1K87_RS17780 WP_074534220.1 3594016..3595161(+) (rapF) [Bacillus amyloliquefaciens strain MG-2]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=799928 P1K87_RS17780 WP_074534220.1 3594016..3595161(+) (rapF) [Bacillus amyloliquefaciens strain MG-2]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541