Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   RFN60_RS20580 Genome accession   NZ_CP133653
Coordinates   3995168..3995962 (-) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain CP38     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3990168..4000962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS20555 (RFN60_20555) - 3991281..3991964 (-) 684 WP_038428106.1 response regulator transcription factor -
  RFN60_RS20560 (RFN60_20560) - 3992176..3993075 (+) 900 WP_029726116.1 PepSY domain-containing protein -
  RFN60_RS20565 (RFN60_20565) - 3993236..3993736 (+) 501 WP_029726115.1 PepSY domain-containing protein -
  RFN60_RS20570 (RFN60_20570) - 3993733..3993863 (-) 131 Protein_4002 hypothetical protein -
  RFN60_RS20575 (RFN60_20575) htrA 3993884..3995086 (-) 1203 WP_015250812.1 serine protease HtrC Regulator
  RFN60_RS20580 (RFN60_20580) vicX 3995168..3995962 (-) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  RFN60_RS20585 (RFN60_20585) walI 3995984..3996826 (-) 843 WP_003226937.1 WalRK two-component regulatory system regulator WalI -
  RFN60_RS20590 (RFN60_20590) walH 3996813..3998180 (-) 1368 WP_032722849.1 WalRK two-component regulatory system regulator WalH -
  RFN60_RS20595 (RFN60_20595) walK 3998170..4000005 (-) 1836 WP_309520520.1 cell wall metabolism sensor histidine kinase WalK -
  RFN60_RS20600 (RFN60_20600) walR 4000013..4000720 (-) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=799892 RFN60_RS20580 WP_003226939.1 3995168..3995962(-) (vicX) [Bacillus subtilis strain CP38]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=799892 RFN60_RS20580 WP_003226939.1 3995168..3995962(-) (vicX) [Bacillus subtilis strain CP38]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGGAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTTCCGATCTATGCG
AACGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCGATGGAGAC
GGTAAAGTCGTTCGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTATTCC
ATTATAACGGCCGAAAGCTCGCATTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTGTTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGTGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTACAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACTGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53