Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   P1K87_RS08220 Genome accession   NZ_CP119596
Coordinates   1627268..1628047 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1622268..1633047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS08200 (P1K87_08200) trmFO 1622955..1624262 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P1K87_RS08205 (P1K87_08205) xerC 1624332..1625249 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  P1K87_RS08210 (P1K87_08210) hslV 1625265..1625810 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  P1K87_RS08215 (P1K87_08215) hslU 1625818..1627230 (+) 1413 WP_254894347.1 HslU--HslV peptidase ATPase subunit -
  P1K87_RS08220 (P1K87_08220) codY 1627268..1628047 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  P1K87_RS08225 (P1K87_08225) flgB 1628401..1628790 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  P1K87_RS08230 (P1K87_08230) flgC 1628790..1629242 (+) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  P1K87_RS08235 (P1K87_08235) fliE 1629253..1629573 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  P1K87_RS08240 (P1K87_08240) fliF 1629616..1631226 (+) 1611 WP_032874889.1 flagellar basal-body MS-ring/collar protein FliF -
  P1K87_RS08245 (P1K87_08245) fliG 1631239..1632255 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  P1K87_RS08250 (P1K87_08250) fliH 1632248..1633003 (+) 756 WP_032874891.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=799889 P1K87_RS08220 WP_003154263.1 1627268..1628047(+) (codY) [Bacillus amyloliquefaciens strain MG-2]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=799889 P1K87_RS08220 WP_003154263.1 1627268..1628047(+) (codY) [Bacillus amyloliquefaciens strain MG-2]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTAGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471