Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   P1K87_RS07135 Genome accession   NZ_CP119596
Coordinates   1369463..1369927 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain MG-2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364463..1374927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1K87_RS07115 (P1K87_07115) - 1364944..1366764 (+) 1821 WP_032874722.1 PAS domain-containing protein -
  P1K87_RS07120 (P1K87_07120) - 1366789..1367958 (-) 1170 WP_032874724.1 aminotransferase A -
  P1K87_RS07125 (P1K87_07125) - 1368159..1368320 (-) 162 WP_007409608.1 hypothetical protein -
  P1K87_RS07130 (P1K87_07130) cheV 1368509..1369420 (+) 912 WP_014417604.1 chemotaxis protein CheV -
  P1K87_RS07135 (P1K87_07135) kre 1369463..1369927 (-) 465 WP_003154622.1 YkyB family protein Regulator
  P1K87_RS07140 (P1K87_07140) - 1370050..1371342 (-) 1293 WP_007611093.1 MFS transporter -
  P1K87_RS07145 (P1K87_07145) - 1371418..1371912 (-) 495 WP_087920795.1 L,D-transpeptidase family protein -
  P1K87_RS07150 (P1K87_07150) - 1371987..1372850 (-) 864 WP_032874726.1 metallophosphoesterase -
  P1K87_RS07155 (P1K87_07155) fadH 1372994..1373758 (+) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  P1K87_RS07160 (P1K87_07160) - 1373872..1374420 (+) 549 WP_032874729.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=799885 P1K87_RS07135 WP_003154622.1 1369463..1369927(-) (kre) [Bacillus amyloliquefaciens strain MG-2]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=799885 P1K87_RS07135 WP_003154622.1 1369463..1369927(-) (kre) [Bacillus amyloliquefaciens strain MG-2]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929