Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN60_RS18680 Genome accession   NZ_CP133653
Coordinates   3620423..3621556 (-) Length   377 a.a.
NCBI ID   WP_003227715.1    Uniprot ID   P70962
Organism   Bacillus subtilis strain CP38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3615423..3626556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS18640 (RFN60_18640) ywnA 3615592..3615993 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  RFN60_RS18645 (RFN60_18645) ureC 3616128..3617837 (-) 1710 WP_003243090.1 urease subunit alpha -
  RFN60_RS18650 (RFN60_18650) ureB 3617834..3618208 (-) 375 WP_029726054.1 urease subunit beta -
  RFN60_RS18655 (RFN60_18655) ureA 3618205..3618522 (-) 318 WP_003227724.1 urease subunit gamma -
  RFN60_RS18660 (RFN60_18660) - 3618713..3618873 (-) 161 Protein_3618 hypothetical protein -
  RFN60_RS21025 - 3619046..3619228 (-) 183 WP_003227720.1 transporter substrate-binding protein -
  RFN60_RS18670 (RFN60_18670) csbD 3619527..3619715 (-) 189 WP_061890996.1 stress response protein CsbD -
  RFN60_RS18675 (RFN60_18675) - 3619788..3620267 (-) 480 WP_003244390.1 hypothetical protein -
  RFN60_RS18680 (RFN60_18680) rapC 3620423..3621556 (-) 1134 WP_003227715.1 response regulator aspartate phosphatase RapB Regulator
  RFN60_RS18685 (RFN60_18685) moaA 3621748..3622773 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  RFN60_RS18690 (RFN60_18690) fdhD 3622789..3623577 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  RFN60_RS18695 (RFN60_18695) - 3623810..3623971 (-) 162 WP_003227706.1 hypothetical protein -
  RFN60_RS18700 (RFN60_18700) ywmD 3624066..3624740 (-) 675 WP_003243553.1 VWA domain-containing protein -
  RFN60_RS18705 (RFN60_18705) - 3624793..3624933 (-) 141 WP_003227702.1 hypothetical protein -
  RFN60_RS18710 (RFN60_18710) ywmC 3625064..3625747 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45037.17 Da        Isoelectric Point: 4.8005

>NTDB_id=799882 RFN60_RS18680 WP_003227715.1 3620423..3621556(-) (rapC) [Bacillus subtilis strain CP38]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSEAAIRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLNMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=799882 RFN60_RS18680 WP_003227715.1 3620423..3621556(-) (rapC) [Bacillus subtilis strain CP38]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAACTGAAAGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCATGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGTAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCGAAGCCGCGATACGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGAATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P70962

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424