Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RFN60_RS17590 Genome accession   NZ_CP133653
Coordinates   3405409..3406122 (-) Length   237 a.a.
NCBI ID   WP_032722590.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3400409..3411122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS17570 (RFN60_17570) ghrB 3400553..3401530 (+) 978 WP_080287632.1 D-glycerate dehydrogenase -
  RFN60_RS17575 (RFN60_17575) psdB 3401568..3403508 (-) 1941 WP_032722585.1 lantibiotic ABC transporter permease PsdB -
  RFN60_RS17580 (RFN60_17580) psdA 3403483..3404262 (-) 780 WP_032722587.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  RFN60_RS17585 (RFN60_17585) psdS 3404345..3405415 (-) 1071 WP_032722588.1 two-component sensor histidine kinase PsdS -
  RFN60_RS17590 (RFN60_17590) braR 3405409..3406122 (-) 714 WP_032722590.1 two-component system response regulator PsdR Regulator
  RFN60_RS17595 (RFN60_17595) - 3406269..3406478 (+) 210 WP_029318346.1 hypothetical protein -
  RFN60_RS17600 (RFN60_17600) yvcN 3406514..3407278 (-) 765 WP_080287633.1 arylamine N-acetyltransferase -
  RFN60_RS17605 (RFN60_17605) crh 3407279..3407536 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  RFN60_RS17610 (RFN60_17610) whiA 3407560..3408510 (-) 951 WP_003243775.1 DNA-binding protein WhiA -
  RFN60_RS17615 (RFN60_17615) mgfK 3408533..3409486 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  RFN60_RS17620 (RFN60_17620) rapZ 3409488..3410375 (-) 888 WP_003243903.1 RNase adapter RapZ -
  RFN60_RS17625 (RFN60_17625) rppI 3410400..3410876 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27496.36 Da        Isoelectric Point: 4.6062

>NTDB_id=799874 RFN60_RS17590 WP_032722590.1 3405409..3406122(-) (braR) [Bacillus subtilis strain CP38]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVIAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSVRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=799874 RFN60_RS17590 WP_032722590.1 3405409..3406122(-) (braR) [Bacillus subtilis strain CP38]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATAGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATATTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAGAATGAGGCCGAATGGAACAGCGTCCGGATTTTGTTTTCCCAAAAA
GAATTCCAGCTTCTCTCGATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAATCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGTTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.982

94.515

0.435