Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Regulator
Locus tag   RFN60_RS16035 Genome accession   NZ_CP133653
Coordinates   3092907..3093770 (-) Length   287 a.a.
NCBI ID   WP_014480705.1    Uniprot ID   Q9FAF1
Organism   Bacillus subtilis strain CP38     
Function   modification of ComX; production of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087907..3098770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS16000 (RFN60_16000) mrpE 3088073..3088549 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  RFN60_RS16005 (RFN60_16005) mrpF 3088549..3088833 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  RFN60_RS16010 (RFN60_16010) mnhG 3088817..3089191 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  RFN60_RS16015 (RFN60_16015) yuxO 3089232..3089612 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  RFN60_RS16020 (RFN60_16020) comA 3089631..3090275 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  RFN60_RS16025 (RFN60_16025) comP 3090356..3092668 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  RFN60_RS16030 (RFN60_16030) comX 3092684..3092905 (-) 222 WP_014480704.1 competence pheromone ComX -
  RFN60_RS16035 (RFN60_16035) comQ 3092907..3093770 (-) 864 WP_014480705.1 polyprenyl synthetase family protein Regulator
  RFN60_RS16040 (RFN60_16040) degQ 3093955..3094095 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  RFN60_RS16045 (RFN60_16045) - 3094317..3094442 (+) 126 WP_003228793.1 hypothetical protein -
  RFN60_RS16050 (RFN60_16050) - 3094557..3094925 (+) 369 WP_046381300.1 hypothetical protein -
  RFN60_RS16055 (RFN60_16055) pdeH 3094901..3096130 (-) 1230 WP_046381301.1 cyclic di-GMP phosphodiesterase -
  RFN60_RS16060 (RFN60_16060) pncB 3096267..3097739 (-) 1473 WP_003228788.1 nicotinate phosphoribosyltransferase -
  RFN60_RS16065 (RFN60_16065) pncA 3097755..3098306 (-) 552 WP_038828671.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32882.57 Da        Isoelectric Point: 5.2201

>NTDB_id=799867 RFN60_RS16035 WP_014480705.1 3092907..3093770(-) (comQ) [Bacillus subtilis strain CP38]
MKEIVDENILNEDLKVKLISFIKEKKQFSFAELAYYHYIAFDGKNDKAIELLASGIELLILSADIFDDIEDKDNLQASWM
KLDPSIATNAATALYTLSLQVIGSVSNHPKLLSLTLQYSLQSLQGQHVDLNLTASSESEYIEMIKLKSGSLVTLPSILGV
YLATGEYNETVEEYSRYLGIVEQIANDHYGLYYPNYNDFKTRHTLAFNYLKNKFNQSSIDLLNFYAQENHMINNLEDLKG
KLRESGVIQYLNVIKNLAVENFKESFKKLRLDEQRKNKLLIQLLRGI

Nucleotide


Download         Length: 864 bp        

>NTDB_id=799867 RFN60_RS16035 WP_014480705.1 3092907..3093770(-) (comQ) [Bacillus subtilis strain CP38]
ATGAAGGAGATTGTGGATGAAAATATTTTAAATGAGGACTTAAAAGTGAAGCTCATTTCTTTTATCAAAGAAAAAAAACA
ATTTTCATTTGCAGAACTGGCTTATTACCATTACATAGCATTTGATGGAAAAAACGACAAAGCAATTGAGTTATTGGCGT
CAGGTATAGAACTTTTAATTTTATCTGCGGACATTTTTGACGATATTGAGGATAAGGACAATCTTCAGGCTTCTTGGATG
AAATTAGATCCTTCTATAGCAACTAACGCAGCTACCGCACTTTATACATTAAGTCTGCAAGTAATAGGTTCAGTCTCAAA
TCATCCAAAACTTTTAAGCCTTACTTTGCAATATTCACTCCAATCTTTACAAGGACAACATGTAGATTTGAATTTAACAG
CCTCATCAGAATCAGAGTATATTGAAATGATTAAACTTAAGTCGGGTTCTCTGGTAACATTGCCCAGTATTCTTGGTGTA
TATCTGGCAACTGGAGAATATAATGAAACAGTTGAGGAGTATTCACGTTATTTAGGTATAGTCGAGCAAATTGCAAATGA
TCACTATGGACTTTATTACCCTAACTATAATGACTTCAAAACTAGACATACGCTTGCCTTCAATTATCTTAAAAATAAAT
TTAACCAATCATCAATTGACTTATTAAATTTTTATGCGCAAGAAAATCATATGATAAATAATTTGGAAGATTTGAAGGGA
AAGTTAAGAGAATCAGGTGTAATACAATATTTGAATGTTATAAAAAATTTAGCAGTGGAAAATTTTAAGGAATCATTCAA
AAAACTGAGATTAGATGAACAAAGAAAAAATAAATTACTTATTCAATTATTAAGGGGGATTTAA

Domains

Predicted by InterProScan.

Polyprenyl synthetase (polyprenyl_synt)

(45-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9FAF1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Bacillus subtilis subsp. subtilis str. 168

45

97.561

0.439