Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RFN60_RS15040 Genome accession   NZ_CP133653
Coordinates   2908194..2908904 (-) Length   236 a.a.
NCBI ID   WP_015251433.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903194..2913904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS15020 (RFN60_15020) cysK 2903245..2904180 (+) 936 WP_003229237.1 cysteine synthase A -
  RFN60_RS15025 (RFN60_15025) pepV 2904214..2905605 (-) 1392 WP_015251436.1 dipeptidase PepV -
  RFN60_RS15030 (RFN60_15030) pbuO 2905702..2907000 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  RFN60_RS15035 (RFN60_15035) ythQ 2907040..2908197 (-) 1158 WP_048655280.1 ABC transporter permease -
  RFN60_RS15040 (RFN60_15040) pptA 2908194..2908904 (-) 711 WP_015251433.1 ABC transporter ATP-binding protein Regulator
  RFN60_RS15045 (RFN60_15045) ytzE 2909194..2909415 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  RFN60_RS15050 (RFN60_15050) rsuA 2909537..2910256 (-) 720 WP_048655246.1 pseudouridine synthase -
  RFN60_RS15055 (RFN60_15055) murJ 2910325..2911959 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  RFN60_RS15060 (RFN60_15060) ytfP 2912162..2913424 (+) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26521.57 Da        Isoelectric Point: 5.0109

>NTDB_id=799863 RFN60_RS15040 WP_015251433.1 2908194..2908904(-) (pptA) [Bacillus subtilis strain CP38]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEYPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDQVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=799863 RFN60_RS15040 WP_015251433.1 2908194..2908904(-) (pptA) [Bacillus subtilis strain CP38]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGTATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCAGGTTAAACATGAGCTGCCTGTCACCTTTTCAAAAGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACCAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGCGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432