Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   P1289_RS11100 Genome accession   NZ_CP119589
Coordinates   2377247..2377963 (-) Length   238 a.a.
NCBI ID   WP_225523027.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain H-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2372247..2382963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P1289_RS11080 (P1289_11050) - 2372917..2373141 (+) 225 WP_042362355.1 sulfurtransferase TusA family protein -
  P1289_RS11085 (P1289_11055) - 2373719..2374681 (+) 963 WP_069794673.1 LacI family DNA-binding transcriptional regulator -
  P1289_RS11090 (P1289_11060) - 2374765..2376249 (+) 1485 WP_069794675.1 sucrose-6-phosphate hydrolase -
  P1289_RS11095 (P1289_11065) - 2376246..2377211 (+) 966 WP_069794676.1 carbohydrate kinase -
  P1289_RS11100 (P1289_11070) agrA 2377247..2377963 (-) 717 WP_225523027.1 quorum-sensing response regulator AgrA Regulator
  P1289_RS11105 (P1289_11075) agrC 2377976..2379271 (-) 1296 WP_069794678.1 quorum-sensing sensor histidine kinase AgrC -
  P1289_RS11110 (P1289_11080) agrD 2379297..2379434 (-) 138 WP_029378926.1 cyclic lactone autoinducer peptide AgrD -
  P1289_RS11115 (P1289_11085) - 2379437..2380006 (-) 570 WP_047172117.1 accessory gene regulator AgrB -
  P1289_RS11120 (P1289_11090) - 2380772..2381557 (-) 786 WP_047172118.1 carbon-nitrogen family hydrolase -
  P1289_RS11125 (P1289_11095) - 2381921..2382550 (-) 630 WP_042362363.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27925.74 Da        Isoelectric Point: 5.4095

>NTDB_id=799828 P1289_RS11100 WP_225523027.1 2377247..2377963(-) (agrA) [Staphylococcus xylosus strain H-1]
MKIFICEDDERQREHMVSIINNYIMIEEKPMEIEVATADPYDILERSKNINDIGCYFLDVQLEADINGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRVIDCLETSESRLKLLSKESSVETIELKRGSNSIYVQYDDVM
FFESSSKSHRLIAHLDNRQIEFYGNLKEIDQLDKRFFRCHNSFVVNRHNIESIDSKSRVVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=799828 P1289_RS11100 WP_225523027.1 2377247..2377963(-) (agrA) [Staphylococcus xylosus strain H-1]
GTGAAAATATTCATTTGTGAAGATGATGAAAGACAACGTGAACATATGGTCTCAATTATAAATAACTATATTATGATTGA
AGAAAAACCAATGGAAATTGAAGTTGCGACAGCTGATCCTTATGACATTTTAGAACGCTCAAAGAACATTAATGATATAG
GATGTTACTTTTTAGATGTTCAACTAGAAGCTGACATCAACGGAATCAAGCTTGCAAGTGAAATACGTAAACATGATCCG
GTTGGCAATATCATTTTTGTTACAAGTCATAGTGAACTGACATACTTAACATTTGTCTACAAGGTTGCAGCAATGGATTT
CATTTTCAAAGATGATCCAGACGAATTAAAATCAAGAGTGATTGATTGCTTAGAAACATCTGAGTCACGATTAAAACTAC
TTTCAAAAGAAAGCAGTGTCGAGACAATAGAATTAAAACGTGGTAGTAATTCTATTTATGTACAATATGACGATGTGATG
TTCTTCGAATCATCTAGTAAATCCCATCGTTTAATCGCACATCTCGATAATCGTCAAATCGAATTTTATGGAAACCTTAA
AGAAATTGATCAGTTAGATAAACGCTTCTTTAGATGTCATAATAGTTTTGTAGTAAATAGACACAATATTGAGTCCATCG
ACTCTAAATCACGCGTAGTTTATTTTAAAAACAATGAACATTGTTATGCTTCTGTAAGAAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

84.454

100

0.845