Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RFN60_RS06680 Genome accession   NZ_CP133653
Coordinates   1287121..1288257 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1282121..1293257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS06660 (RFN60_06660) uxaA 1282571..1284064 (+) 1494 WP_015252294.1 UxaA family hydrolase -
  RFN60_RS06665 (RFN60_06665) yjnA 1284103..1284867 (-) 765 WP_003245643.1 sulfite exporter TauE/SafE family protein -
  RFN60_RS06670 (RFN60_06670) bstD 1285092..1285556 (-) 465 WP_015715724.1 DinB family protein -
  RFN60_RS06675 (RFN60_06675) yjoB 1285705..1286976 (+) 1272 WP_015252292.1 ATPase YjoB -
  RFN60_RS06680 (RFN60_06680) rapC 1287121..1288257 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  RFN60_RS06685 (RFN60_06685) phrA 1288247..1288381 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  RFN60_RS06690 (RFN60_06690) yjpA 1288412..1288669 (-) 258 WP_003232731.1 YciI family protein -
  RFN60_RS06695 (RFN60_06695) xlyB 1288790..1289743 (+) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  RFN60_RS06700 (RFN60_06700) yjqA 1289783..1290160 (-) 378 WP_014479546.1 PH domain-containing protein -
  RFN60_RS06705 (RFN60_06705) pghB 1290266..1290868 (+) 603 WP_003244789.1 poly-gamma-glutamate hydrolase family protein -
  RFN60_RS06710 (RFN60_06710) xpdC 1290945..1291781 (+) 837 WP_003245071.1 manganese catalase family protein -
  RFN60_RS06715 (RFN60_06715) xkdA 1291825..1292421 (-) 597 WP_015252288.1 ImmA/IrrE family metallo-endopeptidase -
  RFN60_RS06720 (RFN60_06720) xre 1292584..1292925 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=799798 RFN60_RS06680 WP_015252291.1 1287121..1288257(+) (rapC) [Bacillus subtilis strain CP38]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=799798 RFN60_RS06680 WP_015252291.1 1287121..1288257(+) (rapC) [Bacillus subtilis strain CP38]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCTTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418