Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RFN60_RS05405 Genome accession   NZ_CP133653
Coordinates   1043931..1044674 (+) Length   247 a.a.
NCBI ID   WP_015252439.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038931..1049674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS05370 (RFN60_05370) yhaI 1039262..1039603 (+) 342 WP_009966921.1 YhaI family protein -
  RFN60_RS05375 (RFN60_05375) scoC 1039600..1040211 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  RFN60_RS05380 (RFN60_05380) yhaH 1040389..1040745 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  RFN60_RS05385 (RFN60_05385) - 1040875..1041066 (+) 192 WP_003233238.1 hypothetical protein -
  RFN60_RS05390 (RFN60_05390) trpP 1041140..1041658 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  RFN60_RS05395 (RFN60_05395) serC 1041782..1042861 (-) 1080 WP_015252440.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  RFN60_RS05400 (RFN60_05400) hinT 1043008..1043445 (-) 438 WP_003233231.1 HIT family protein -
  RFN60_RS05405 (RFN60_05405) pptA 1043931..1044674 (+) 744 WP_015252439.1 ABC transporter ATP-binding protein EcsA Regulator
  RFN60_RS05410 (RFN60_05410) ecsB 1044667..1045893 (+) 1227 WP_048654855.1 ABC transporter permease EcsB -
  RFN60_RS05415 (RFN60_05415) ecsC 1045913..1046623 (+) 711 WP_015252437.1 EcsC family protein -
  RFN60_RS05420 (RFN60_05420) sndC 1046641..1047831 (-) 1191 WP_044052577.1 N-acetyl amino acid acetylase SndC -
  RFN60_RS05425 (RFN60_05425) - 1047904..1049295 (-) 1392 WP_080019530.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27738.20 Da        Isoelectric Point: 5.9114

>NTDB_id=799780 RFN60_RS05405 WP_015252439.1 1043931..1044674(+) (pptA) [Bacillus subtilis strain CP38]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=799780 RFN60_RS05405 WP_015252439.1 1043931..1044674(+) (pptA) [Bacillus subtilis strain CP38]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACATATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTTCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATATGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAGAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547