Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   RFN60_RS04205 Genome accession   NZ_CP133653
Coordinates   824837..825553 (+) Length   238 a.a.
NCBI ID   WP_046380854.1    Uniprot ID   -
Organism   Bacillus subtilis strain CP38     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 819837..830553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS04185 (RFN60_04185) - 820744..821016 (-) 273 Protein_774 spore gernimation protein -
  RFN60_RS20975 - 821065..821145 (-) 81 Protein_775 spore germination protein -
  RFN60_RS20980 - 821272..821457 (-) 186 Protein_776 spore germination protein -
  RFN60_RS04195 (RFN60_04195) treP 821646..823058 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  RFN60_RS04200 (RFN60_04200) treC 823128..824816 (+) 1689 WP_046380853.1 alpha,alpha-phosphotrehalase -
  RFN60_RS04205 (RFN60_04205) treR 824837..825553 (+) 717 WP_046380854.1 trehalose operon repressor Regulator
  RFN60_RS04210 (RFN60_04210) hypO 825693..826358 (+) 666 WP_029726870.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.83 Da        Isoelectric Point: 7.1737

>NTDB_id=799773 RFN60_RS04205 WP_046380854.1 824837..825553(+) (treR) [Bacillus subtilis strain CP38]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=799773 RFN60_RS04205 WP_046380854.1 824837..825553(+) (treR) [Bacillus subtilis strain CP38]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATTCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACCTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTAGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42