Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   RFN60_RS02425 Genome accession   NZ_CP133653
Coordinates   474591..475025 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain CP38     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 469591..480025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RFN60_RS02395 (RFN60_02395) ydaD 470237..471097 (+) 861 WP_032722917.1 SDR family oxidoreductase -
  RFN60_RS02400 (RFN60_02400) lyxE 471113..471617 (+) 505 Protein_429 D-lyxose ketol-isomerase -
  RFN60_RS02405 (RFN60_02405) ydaF 471705..472256 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  RFN60_RS02410 (RFN60_02410) ydaG 472334..472756 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  RFN60_RS02415 (RFN60_02415) amj 473262..474071 (+) 810 WP_032722918.1 lipid II flippase Amj -
  RFN60_RS02420 (RFN60_02420) ydzA 474116..474406 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  RFN60_RS02425 (RFN60_02425) lrpC 474591..475025 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  RFN60_RS02430 (RFN60_02430) topB 475090..477273 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  RFN60_RS02435 (RFN60_02435) ephJ 477476..478564 (+) 1089 WP_003246551.1 lipoprotein -
  RFN60_RS02440 (RFN60_02440) epsK 478545..479396 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=799770 RFN60_RS02425 WP_003246585.1 474591..475025(+) (lrpC) [Bacillus subtilis strain CP38]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=799770 RFN60_RS02425 WP_003246585.1 474591..475025(+) (lrpC) [Bacillus subtilis strain CP38]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1