Detailed information NTG0799758

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RFN60_RS01665
• Genome accession: NZ_CP133653
• Coordinates: 302903..304024 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain CP38
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 297903..309024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFN60_RS01640 (RFN60_01640)	ycdA	297911..298975 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
RFN60_RS01645 (RFN60_01645)	-	298998..299129 (-)	132	WP_003246334.1	hypothetical protein	-
RFN60_RS01650 (RFN60_01650)	ycdB	299303..300721 (+)	1419	WP_085186706.1	YcdB/YcdC domain-containing protein	-
RFN60_RS01655 (RFN60_01655)	ycdC	300908..302269 (+)	1362	WP_163260164.1	YcdB/YcdC domain-containing protein	-
RFN60_RS01660 (RFN60_01660)	cwlK	302277..302780 (-)	504	WP_021481861.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
RFN60_RS01665 (RFN60_01665)	rapF	302903..304024 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
RFN60_RS01670 (RFN60_01670)	ycdF	304132..304908 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
RFN60_RS01675 (RFN60_01675)	ycdG	304933..306618 (+)	1686	WP_195727655.1	alpha-glucosidase	-
RFN60_RS01680 (RFN60_01680)	znuA	306806..307765 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
RFN60_RS01685 (RFN60_01685)	znuC	307821..308516 (+)	696	WP_003234730.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=799758 RFN60_RS01665 WP_003234740.1 302903..304024(+) (rapF) [Bacillus subtilis strain CP38]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=799758 RFN60_RS01665 WP_003234740.1 302903..304024(+) (rapF) [Bacillus subtilis strain CP38]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATTAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGCGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTAACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405