Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   RDV59_RS09810 Genome accession   NZ_CP133476
Coordinates   2095271..2098591 (-) Length   1106 a.a.
NCBI ID   WP_038676732.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2090271..2103591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS09800 (RDV59_09800) - 2090545..2091276 (+) 732 WP_038676728.1 DUF554 domain-containing protein -
  RDV59_RS09805 (RDV59_09805) rexA 2091628..2095281 (-) 3654 WP_038676730.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  RDV59_RS09810 (RDV59_09810) rexB 2095271..2098591 (-) 3321 WP_038676732.1 ATP-dependent nuclease subunit B Machinery gene
  RDV59_RS09815 (RDV59_09815) - 2098840..2100213 (-) 1374 WP_022495868.1 GHKL domain-containing protein -
  RDV59_RS09820 (RDV59_09820) - 2100247..2101557 (-) 1311 WP_038676734.1 hypothetical protein -
  RDV59_RS09825 (RDV59_09825) - 2101838..2103577 (-) 1740 WP_038676736.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126091.62 Da        Isoelectric Point: 4.9615

>NTDB_id=799741 RDV59_RS09810 WP_038676732.1 2095271..2098591(-) (rexB) [Streptococcus salivarius strain LMG 11489]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQVEKQEDLLRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALGNTVLVIDGFTRFSAEEEALVAHLSDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTIDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEESMSSHPLVQFVDSLERIKRYNYRAEDLLNLIKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNTLRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQVD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSQLDADLDKETQTFWSVAVRYLRKRLEKNQVLIPH
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQEPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLEYNIKLFTGAAEVIRSGNFVVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSRGKKEAYLELMAKDEDKNQMQVAEKIIPFPVTDQAVTADKKDQEDNNVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=799741 RDV59_RS09810 WP_038676732.1 2095271..2098591(-) (rexB) [Streptococcus salivarius strain LMG 11489]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTATTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGTGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTATAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGTTGAAAAACAAGAGGATTTGCTCAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTTAGTGCCTTCTTCAAGGAAATTACCTCAGGACATCTGGATAAGGCACTGGGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAGGCCCTAGTTGCCCACTTGAGTGATAAGTGCC
ACCAAATTGTCATTGGGACTTATGCTAGTCAAAAGGCTTATAGGGCTAATTTTGTCTATGGCAATGTTTATCAAGCTTCA
GTGGATTTTCTGAGAACTCTGGCTCAGACCTATAAGGTGACACCCGACTATGTGACGACAGACAAAGAGGGGAATCCTTC
TTTTGCACGTATTAGCCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGATTGACGAACAGCTGACTGCTCAGGACAAGC
AAGCTTTGCAGGTTTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTAGCA
GATGGCAAGCGCTATAAGGATATCTTGGTCTTGCTAGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTTCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAAGTATGTCTAGCCACCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTATCGTGCTGAGGATCTGCTTAATCTCATAAAATCCGGTCTTTATGGTGGTTTTGCTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGACATCAAGGGGCGTCACAAGTTCCTTTCTGATTTCACGGC
TAATAGTCGTGATAAGTATGATTTGGATCAGCTCAATACCTTACGGTCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ATAGTCGCAAACAGAAGGGGTCTAGTCTGCTCAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAAATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCCGAAAAAGAACAGAATGAACAGGTCTGGAAGGCCTTCACTCAACTCTTGGA
GCAGGTTGAGACTATTTTTGGGGAAGAAACTCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTCCCAGCCACTGTTGATGTGGTCAATGTGAAAAAATACGATTTGATCCAGCCACATTCTGCTCCT
TATGTTTTTGCCTTGGGCATGACCCAGTCGCATTTTCCAAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAAGCTACGGATGAACACCGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTCG
TGGCTATGTCACTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAGATTCTCAATGAGACGCAGGTTGAC
ATGTCGGTTTATTTGAAGGAGCTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
CGACCAGATTGGGAACTACAAGGACCTTCTGTCGACTGTCATTGCTCTTAACAGCAGTCAGCTAGATGCTGATTTGGATA
AGGAAACCCAGACTTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGAGACTTGAAAAGAACCAAGTCTTGATTCCACAT
GTAATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGTTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCTTCGGCTCTGACAACCTTCTATAACAACCAGTATCTTTATTTCTTGCGCTATGTCTTGGGGCTTGAAGAGTTGG
AATCTATCCATCCGGATGCTCGACACCACGGGACTTACTTGCACCGTGTCTTTGAGCGTGTCATGGGGGATTCTTCGTCA
GAAAACTTCGATGATAAACTGGAAAAGGCAATTGCTCAGACCAATCAGGAGCAACCCTTTGAACTCCTCTATACGGAGGA
CCAGGAGAGTCGTTTGTCCCGTCAGATTTTGGAAGATATCGCTCGTTCTACAGCTAGTGTTTTACGTGACAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGATTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAGTCAGGTAAAAATGTCTTTGACATTCAAAAATTCTACAA
TGGCCTTAGTCCGCAGTTGGTAACCTATCTAGAAGCCCTTCGCCAAACCTATAAGGTCGATGCCGACCAGCTTTTTGGGG
CCATGTATCTACATATGCAGGAGCCACAGCTTAATCTGGCTCAGTTTGGTTTGGATAAGCTAGCGGCTCAGGCTCATAAG
GAATTGACCTATAAGGGACTTTTTGTGGCTTCAGAGACGGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTACGACAAGGAGGACCTAGAGACCTTGCTAGAATACAACATTAAGCTCTTTACAGGTGCTGCTGAAGTTATTAGAA
GCGGTAATTTTGTGGTTAATCCTTATACCGAAGATGGCAAGTCTGTTCAAGGAGATCAAATCAAGGCAATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGGAAGCTCCTGCGTTTACCAAGTAGGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACAAGAATCAGATGCAAGTTGCTGAAAAAATCATCCCCTTTCCAGTCACCGACCAAGCTGTGA
CAGCAGACAAAAAAGACCAGGAGGACAACAATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.566

98.373

0.429