Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   RDV59_RS08940 Genome accession   NZ_CP133476
Coordinates   1919915..1920652 (-) Length   245 a.a.
NCBI ID   WP_022496803.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1914915..1925652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS08920 (RDV59_08920) - 1916240..1916488 (-) 249 WP_002884680.1 KH domain-containing protein -
  RDV59_RS08925 (RDV59_08925) rpsP 1916500..1916772 (-) 273 WP_002884675.1 30S ribosomal protein S16 -
  RDV59_RS08930 (RDV59_08930) - 1916935..1918314 (-) 1380 WP_022496805.1 hypothetical protein -
  RDV59_RS08935 (RDV59_08935) - 1918426..1919604 (-) 1179 WP_002884300.1 sensor histidine kinase -
  RDV59_RS08940 (RDV59_08940) comE/comE1 1919915..1920652 (-) 738 WP_022496803.1 LytTR family DNA-binding domain-containing protein Regulator
  RDV59_RS08945 (RDV59_08945) - 1920866..1922137 (+) 1272 WP_038676599.1 matrixin family metalloprotease -
  RDV59_RS08950 (RDV59_08950) tehB 1922918..1923796 (+) 879 WP_022496801.1 SAM-dependent methyltransferase TehB -
  RDV59_RS08955 (RDV59_08955) - 1923880..1924632 (-) 753 WP_022496800.1 DUF4767 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28035.97 Da        Isoelectric Point: 4.7123

>NTDB_id=799728 RDV59_RS08940 WP_022496803.1 1919915..1920652(-) (comE/comE1) [Streptococcus salivarius strain LMG 11489]
MLSIIVLEDDALQRHRVSRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDADLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVSNVTSVDRTANMVFFEGDESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=799728 RDV59_RS08940 WP_022496803.1 1919915..1920652(-) (comE/comE1) [Streptococcus salivarius strain LMG 11489]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTAGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACCTTTTATGAGCAAGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACGAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATCGCTTTTGTTACAGCCTACTCTGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
GGACTTTGTTGATAAATCCATGGAAGATGCAGATCTTAAGAGAGCCTTGGTAGAACTTTTAGATTTTGCGTATTCGCAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTGACGGTAAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAAACAGCCCCTGTGCCACATAAGTTGATTGCTCACACCAAGTCAAATCTAGTAGAATTCTATGGAAAAATTGC
AGAAGTAGCGAAATTGGATGATATTTTCTTCCAAACGCATCGCTCTTTTGTTGTCAATGTGAGTAATGTGACAAGTGTGG
ATCGTACGGCTAATATGGTCTTCTTTGAGGGAGACGAGTCATGCCTCCTCTCGCGGACACGTAAAAAGGAACTTTTGGAA
CGATTGAAAAATCGTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-123)

LytTr DNA-binding domain (LytTR)

(152-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.037

99.184

0.367