Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CupriaWKF_RS10555 Genome accession   NZ_CP119572
Coordinates   2266137..2268548 (-) Length   803 a.a.
NCBI ID   WP_276097848.1    Uniprot ID   -
Organism   Cupriavidus sp. WKF15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261137..2273548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CupriaWKF_RS10540 (CupriaWKF_10540) - 2262421..2262927 (-) 507 WP_276097845.1 gluconokinase -
  CupriaWKF_RS10545 (CupriaWKF_10545) edd 2263063..2264958 (-) 1896 WP_276097846.1 phosphogluconate dehydratase -
  CupriaWKF_RS10550 (CupriaWKF_10550) - 2265195..2266124 (+) 930 WP_276097847.1 SIS domain-containing protein -
  CupriaWKF_RS10555 (CupriaWKF_10555) comA 2266137..2268548 (-) 2412 WP_276097848.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CupriaWKF_RS10560 (CupriaWKF_10560) - 2268619..2269473 (-) 855 WP_276097849.1 TatD family hydrolase -
  CupriaWKF_RS10565 (CupriaWKF_10565) - 2269488..2270225 (-) 738 WP_276097850.1 ATP-binding cassette domain-containing protein -
  CupriaWKF_RS10570 (CupriaWKF_10570) - 2270218..2271468 (-) 1251 WP_276097851.1 lipoprotein-releasing ABC transporter permease subunit -
  CupriaWKF_RS10575 (CupriaWKF_10575) - 2271585..2272685 (+) 1101 WP_276100756.1 hypothetical protein -

Sequence

Protein


Download         Length: 803 a.a.        Molecular weight: 86054.37 Da        Isoelectric Point: 10.3592

>NTDB_id=799700 CupriaWKF_RS10555 WP_276097848.1 2266137..2268548(-) (comA) [Cupriavidus sp. WKF15]
MRLILLGFVAGCWALQRQGTVPATGLLGMVALLLAAVIALAVARLPHRPASWPARLVAVLLGLAVGFCWSAWRAQLRMDD
WLATRLEARDIEVRGVVSGLPAELAPGARFAFTVEAGPRGERVPGRIVLNWREAPPELRPGQRYAFTVRLRRPRGLANPH
GFDYAYWLLAQGYGATGYVRGVRDGPKDAAGERLAWRIEAQRAALRDRIRAALPPDSRFAAVLVALVVGDQRGIDSEDWL
LFNRTGVGHLVSISGLHITMIAGMAAGLAHWAWRHSFGLGRCLRRPLPLRCPARQAALVAAVLAGLGYGLIAGLQIPALR
TVAMLSMAALAAWGARTPPASMVLAWAALAALLLDPWAVMLPGFWLSFGAVGVIFLAAARPEAPVRGFWPRLRASLAAAA
RTQWAVTVGLVPLTLLLFRQFPVISPLANAVAIPVVSMLVTPLALLGAVLPAILAGPLLALAHQALAWLVVLLQWLASPG
WAVWETAQAGALETALALLGTLVLLVPAMFGLRIRLHGLLLTLPMLLARGDEVAPGEFRAVMLDVGQGTAVLVQTRAHAL
LYDAGPAYASGGSAGAQVVVPHLRAAGVRRLDHLMVSHEDIDHAGGAQHVLEAVPVDIRSTAAPPGHALLGKAQWVPCGA
GQHWEWDGVLFTVLHPAVEQSGDAGIGSNARSCVLRIDNGRHSLLLTGDIGRTEERELADRLPAELLRAEVLVVPHHGSG
TSSSPAWLAAVGPDAAVFQLGYRNRYQHPRAEVWERYGSAGILRYRTDETGAVTMATHGEGYSLEAFRQSERRYWREAPE
APR

Nucleotide


Download         Length: 2412 bp        

>NTDB_id=799700 CupriaWKF_RS10555 WP_276097848.1 2266137..2268548(-) (comA) [Cupriavidus sp. WKF15]
GTGCGCCTGATCCTGCTGGGTTTCGTGGCTGGCTGCTGGGCCTTGCAGCGGCAGGGCACCGTGCCGGCAACGGGCCTGCT
GGGCATGGTGGCGCTCTTGCTGGCTGCCGTGATCGCGCTGGCGGTCGCGCGGCTCCCGCACCGGCCCGCAAGCTGGCCAG
CGCGGCTGGTGGCCGTGCTGCTTGGGCTTGCCGTGGGCTTTTGCTGGTCCGCGTGGCGCGCACAGTTGCGCATGGATGAC
TGGCTGGCGACGCGGCTCGAGGCGCGCGACATCGAGGTGAGGGGCGTGGTCTCCGGCTTGCCCGCGGAACTGGCGCCGGG
CGCCCGCTTTGCCTTCACGGTCGAGGCTGGGCCACGCGGCGAGCGCGTGCCGGGCCGTATTGTCCTGAACTGGCGCGAAG
CGCCCCCCGAATTGCGGCCAGGCCAGCGCTATGCGTTCACGGTGCGCTTGCGTCGTCCGCGCGGGCTGGCGAACCCCCAC
GGCTTCGACTATGCATACTGGCTGCTGGCGCAAGGCTATGGCGCGACGGGCTATGTGCGCGGCGTGCGCGACGGACCGAA
GGATGCGGCTGGCGAACGCCTGGCGTGGCGCATCGAGGCGCAACGCGCGGCGCTGCGCGACCGCATTCGCGCCGCACTGC
CGCCTGACTCGCGTTTTGCCGCGGTCCTGGTTGCGCTGGTGGTCGGCGACCAGCGCGGTATCGACAGCGAAGACTGGCTG
CTGTTCAACCGAACCGGCGTCGGTCACCTGGTCAGTATTTCAGGGCTGCACATCACCATGATCGCCGGCATGGCCGCGGG
GCTGGCGCACTGGGCGTGGCGGCACTCCTTCGGCCTGGGGCGCTGCTTGCGCCGGCCGTTGCCGTTGCGGTGCCCGGCGC
GGCAGGCGGCGCTGGTGGCGGCTGTGCTGGCAGGGTTGGGCTACGGGCTCATTGCCGGGCTGCAGATCCCTGCGCTGCGC
ACTGTCGCAATGTTGTCGATGGCCGCGCTCGCGGCCTGGGGCGCGCGCACGCCGCCGGCGTCGATGGTGCTTGCGTGGGC
GGCATTGGCTGCGCTGTTGCTGGACCCGTGGGCGGTGATGCTGCCGGGCTTCTGGCTGTCGTTCGGCGCGGTCGGCGTGA
TCTTCCTGGCGGCGGCGCGACCGGAAGCGCCTGTGCGCGGTTTCTGGCCGCGCTTGCGCGCCTCGCTGGCCGCCGCGGCA
CGCACGCAATGGGCGGTCACGGTCGGGCTGGTGCCGCTTACGCTGCTGCTTTTCCGGCAGTTTCCCGTCATTTCCCCGCT
TGCCAATGCCGTGGCCATTCCCGTCGTCAGCATGCTGGTCACGCCGCTGGCACTGCTGGGCGCGGTGTTGCCGGCGATCC
TGGCCGGGCCGCTGCTGGCGCTTGCGCATCAGGCACTGGCGTGGCTGGTGGTGCTGCTGCAATGGCTGGCATCTCCCGGG
TGGGCGGTCTGGGAAACGGCGCAGGCCGGCGCGCTGGAGACGGCGCTGGCCCTGCTGGGCACGCTCGTCCTGCTGGTGCC
GGCAATGTTCGGGCTGCGCATACGGCTGCATGGGCTGCTGCTGACCCTTCCCATGCTGCTCGCGCGCGGCGATGAGGTCG
CGCCCGGAGAATTCCGCGCGGTGATGCTTGACGTGGGGCAGGGCACCGCCGTACTGGTGCAGACGCGCGCGCATGCCTTG
CTCTATGACGCCGGACCTGCCTATGCCTCGGGAGGCAGCGCCGGAGCGCAGGTCGTCGTGCCCCACCTGCGCGCGGCCGG
CGTGCGCAGGCTCGACCATCTGATGGTCAGTCACGAGGATATCGATCACGCAGGCGGGGCCCAGCACGTCCTGGAAGCCG
TGCCGGTCGATATCAGATCAACCGCCGCGCCGCCAGGGCACGCACTGCTCGGCAAGGCGCAATGGGTGCCGTGTGGCGCA
GGTCAGCACTGGGAGTGGGATGGCGTGCTGTTCACCGTGCTGCATCCGGCGGTGGAGCAGTCCGGCGATGCCGGAATCGG
CAGCAATGCGCGCAGCTGCGTGCTGCGCATTGACAATGGCCGCCACAGCCTGTTGCTGACCGGCGATATCGGCAGGACGG
AGGAGCGCGAGCTGGCCGACCGGCTGCCCGCGGAATTGCTGCGCGCCGAAGTCCTTGTGGTGCCGCACCATGGCAGTGGC
ACATCGTCCAGTCCCGCGTGGCTGGCAGCGGTCGGGCCCGATGCGGCGGTTTTCCAGCTTGGCTACCGCAACCGCTACCA
GCATCCGCGCGCCGAAGTGTGGGAGCGCTATGGCAGCGCGGGCATCCTGCGCTATCGCACCGACGAAACCGGTGCGGTCA
CCATGGCTACGCATGGCGAAGGCTATTCGCTGGAGGCGTTCCGCCAGTCGGAGCGTCGCTACTGGCGCGAAGCTCCGGAA
GCGCCGAGATAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(226-506)

Domain of unknown function (DUF4131) (DUF4131)

(31-183)

Metallo-beta-lactamase superfamily (Lactamase_B)

(544-737)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

48.239

100

0.512