Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RDV59_RS05675 Genome accession   NZ_CP133476
Coordinates   1120170..1121840 (+) Length   556 a.a.
NCBI ID   WP_038675832.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1115170..1126840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05645 (RDV59_05645) - 1115555..1116316 (+) 762 WP_002884107.1 hypothetical protein -
  RDV59_RS05650 (RDV59_05650) xseA 1116503..1117831 (+) 1329 WP_013990727.1 exodeoxyribonuclease VII large subunit -
  RDV59_RS05655 (RDV59_05655) - 1117821..1118036 (+) 216 WP_002884058.1 exodeoxyribonuclease VII small subunit -
  RDV59_RS05660 (RDV59_05660) - 1118036..1118908 (+) 873 WP_037601093.1 polyprenyl synthetase family protein -
  RDV59_RS05665 (RDV59_05665) - 1118901..1119728 (+) 828 WP_038675829.1 TlyA family RNA methyltransferase -
  RDV59_RS05670 (RDV59_05670) - 1119715..1120161 (+) 447 WP_002884132.1 arginine repressor -
  RDV59_RS05675 (RDV59_05675) recN 1120170..1121840 (+) 1671 WP_038675832.1 DNA repair protein RecN Machinery gene
  RDV59_RS05680 (RDV59_05680) - 1121910..1122746 (+) 837 WP_038675834.1 DegV family protein -
  RDV59_RS05685 (RDV59_05685) - 1122739..1123614 (+) 876 WP_022496504.1 SGNH/GDSL hydrolase family protein -
  RDV59_RS05690 (RDV59_05690) - 1123607..1124179 (+) 573 WP_038675837.1 YpmS family protein -
  RDV59_RS05695 (RDV59_05695) - 1124316..1124591 (+) 276 WP_002884048.1 HU family DNA-binding protein -
  RDV59_RS05700 (RDV59_05700) - 1124651..1124851 (+) 201 WP_002883994.1 hypothetical protein -
  RDV59_RS05705 (RDV59_05705) - 1124913..1125848 (-) 936 WP_038675839.1 dihydroorotate oxidase -
  RDV59_RS05710 (RDV59_05710) - 1126104..1126796 (+) 693 WP_002884137.1 phosphoglycerate mutase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62338.46 Da        Isoelectric Point: 4.5901

>NTDB_id=799698 RDV59_RS05675 WP_038675832.1 1120170..1121840(+) (recN) [Streptococcus salivarius strain LMG 11489]
MLLEITIKNFAIIEEISLNFENGMTVLTGETGAGKSIIIDAMNLMLGARASSEVVRHSASKAEIQGFFSIEQNPALVSIL
EDNGIPVEDELIIRREIFQNGRSVSRINGQMVNLTTLKAVGHFLVDIHGQHDQEELMKPALHITMLDAFGDKEFFQTKKE
YQEYFDRYRELRKAVLEKQKNEQEHKARIEMLAFQIAEIEAVSLKSGEDLALMKERDKLLNHKQIADTLTNAYVMLDNED
FSSLSNVRSAMNDLQSLEEYDSDYKELSGNLSEAYYVLEDVTKQLGDLLDNLDFDAGRLQEIEHRLDTINAITRKYGGTV
DDVLDYLENSSKEYNLLTGNSSSSDAMEQELKQLEKDLLASAETLQTARHQIAKALEAEIKNELCDLYMDKADFKVTFTK
GKFNRDGNEQVEFYISTNPGEGFKPLVKVASGGELSRLMLAIKSAFARKEDKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SHGQVLAISHLPQVIAIADYQFFISKESDNETTVSRVRLLTPEERVQEIAKMLAGDNVTEAALSQARALLKVDDSL

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=799698 RDV59_RS05675 WP_038675832.1 1120170..1121840(+) (recN) [Streptococcus salivarius strain LMG 11489]
ATGCTTCTCGAAATTACGATAAAGAATTTCGCAATTATTGAAGAGATTTCTCTAAACTTTGAGAATGGTATGACCGTCCT
TACTGGTGAAACAGGTGCTGGTAAGTCCATTATTATAGATGCCATGAATCTTATGTTGGGCGCACGTGCTTCTAGCGAAG
TCGTCCGTCATTCAGCATCTAAGGCTGAAATTCAGGGCTTCTTTTCAATCGAACAAAATCCTGCCTTGGTTAGTATCTTG
GAAGATAATGGGATTCCTGTCGAGGATGAATTGATTATCCGTCGTGAAATCTTCCAAAATGGTAGAAGTGTTAGTCGTAT
CAATGGACAGATGGTCAATTTAACGACGCTTAAAGCTGTTGGGCACTTCTTGGTAGATATCCATGGACAGCATGATCAGG
AAGAGCTTATGAAACCTGCTCTGCATATTACCATGCTTGATGCCTTTGGTGACAAGGAATTTTTCCAAACTAAGAAAGAA
TACCAAGAGTATTTTGACCGCTATCGTGAGTTAAGAAAAGCCGTTCTTGAAAAGCAAAAAAATGAGCAGGAGCATAAGGC
TCGAATTGAAATGCTAGCTTTTCAGATTGCAGAAATTGAAGCAGTCTCTCTAAAATCAGGAGAAGATTTGGCATTGATGA
AGGAGCGAGACAAGCTTCTTAACCATAAGCAGATTGCGGATACCTTAACCAATGCCTATGTCATGCTGGATAATGAAGAT
TTTTCAAGTCTTTCAAATGTCCGTTCTGCTATGAATGATCTTCAATCTCTTGAAGAGTATGACTCTGATTACAAAGAACT
TTCTGGAAATCTATCAGAAGCCTATTATGTTTTAGAAGATGTCACTAAGCAACTAGGTGACCTTTTGGATAATTTGGACT
TTGATGCTGGGCGTTTGCAAGAGATTGAACACCGCTTAGATACGATTAATGCAATTACTCGTAAATATGGTGGAACTGTT
GATGACGTCTTGGATTATCTGGAAAATTCAAGTAAAGAGTACAATCTTCTGACTGGCAATTCCAGTTCGTCAGATGCCAT
GGAACAAGAGCTTAAGCAACTTGAAAAAGATCTGCTAGCGTCTGCAGAGACACTACAAACGGCACGCCATCAAATAGCTA
AGGCTCTTGAAGCTGAAATTAAGAACGAGTTATGCGACCTTTACATGGATAAGGCTGATTTTAAAGTTACCTTTACTAAA
GGGAAATTTAACCGTGATGGCAATGAGCAGGTTGAGTTTTACATTTCAACCAATCCAGGTGAAGGCTTTAAACCGCTTGT
TAAGGTTGCTTCAGGAGGAGAATTATCTCGACTCATGTTAGCGATTAAGTCAGCCTTTGCCCGCAAAGAAGACAAAACAA
GTATTGTCTTTGATGAGGTTGATACTGGCGTTTCAGGTCGTGTTGCCCAAGCCATCGCTCAGAAAATTCATAAGATTGGG
AGTCATGGTCAGGTTTTGGCCATCAGTCACCTTCCACAAGTTATTGCCATTGCTGATTATCAGTTCTTTATTTCTAAGGA
AAGTGATAATGAGACAACTGTCTCTCGTGTTCGTCTCTTGACACCTGAGGAAAGGGTGCAAGAAATCGCTAAGATGTTAG
CAGGTGATAATGTGACGGAGGCTGCCTTGAGCCAGGCAAGAGCCTTGTTAAAGGTGGATGACTCTCTTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

44.154

100

0.455