Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RDV59_RS05620 Genome accession   NZ_CP133476
Coordinates   1110057..1112258 (+) Length   733 a.a.
NCBI ID   WP_037598870.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1105057..1117258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS05590 (RDV59_05590) hflX 1105470..1106708 (+) 1239 WP_038677002.1 GTPase HflX -
  RDV59_RS05595 (RDV59_05595) - 1106701..1107342 (+) 642 WP_037598872.1 cystathionine beta-lyase -
  RDV59_RS05600 (RDV59_05600) rnz 1107374..1108303 (+) 930 WP_002884122.1 ribonuclease Z -
  RDV59_RS05605 (RDV59_05605) - 1108303..1109070 (+) 768 WP_013990734.1 SDR family oxidoreductase -
  RDV59_RS05610 (RDV59_05610) - 1109082..1109306 (+) 225 Protein_1056 class I SAM-dependent methyltransferase -
  RDV59_RS05615 (RDV59_05615) - 1109341..1109745 (+) 405 WP_038675821.1 GNAT family N-acetyltransferase -
  RDV59_RS05620 (RDV59_05620) recJ 1110057..1112258 (+) 2202 WP_037598870.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RDV59_RS05625 (RDV59_05625) - 1112377..1112895 (+) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  RDV59_RS05630 (RDV59_05630) metA 1113068..1114012 (+) 945 WP_038675823.1 homoserine O-succinyltransferase -
  RDV59_RS05635 (RDV59_05635) - 1114085..1114783 (+) 699 WP_004182658.1 DnaD domain-containing protein -
  RDV59_RS05640 (RDV59_05640) nth 1114783..1115427 (+) 645 WP_038675827.1 endonuclease III -
  RDV59_RS05645 (RDV59_05645) - 1115555..1116316 (+) 762 WP_002884107.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82262.34 Da        Isoelectric Point: 4.3132

>NTDB_id=799697 RDV59_RS05620 WP_037598870.1 1110057..1112258(+) (recJ) [Streptococcus salivarius strain LMG 11489]
MITSTYDWKINTKEPDAGFFKLAKERGLAETAAKIAYERGITTEDTLEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQILVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDTDYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQNIFDEAITMVDPDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGRLSEILCHYVYDNDIDTSAKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMSLPEGLPSVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=799697 RDV59_RS05620 WP_037598870.1 1110057..1112258(+) (recJ) [Streptococcus salivarius strain LMG 11489]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACGTGG
GTTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCATTACGACAGAAGATACTCTTGAAGACTTTCTAAAGGCTG
ATTTATCACACCTTCATGATCCTTATCTTCTTCATGATATGGATAAGGCAGTGGCTAGAATTCGTCAGGCCATTGAAAAT
TATGAGCAAATCTTAGTCTATGGAGACTATGATGCGGATGGAATGACGTCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGGGCTGAAGCTAGAGTCTATTTGCCTAACCGGTTTACAGATGGTTATGGGCCAAACGAAAGTGTCTACAAGTACT
TCATTGAACAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAGGCTATCGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCATCACAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATACCGATTATCCTTTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACTGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCCGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTCAAGGTCGGCCTGGAAATTCTAAAGACTACTGAGCGTATTGGACTGCAAGAGTTACTCCGTATTTCAGATGT
AGACCCAACAACGATTTCTGAAGAAACGGTAGGATTTAAACTGGCCCCTCAACTCAATGCCTTGGGGCGCTTAGATGATC
CAAATCCAGCCATTGAACTGCTGACCGGATTTGACGATGAAGAAGCCCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAACATCTTTGATGAAGCCATAACCATGGTAGACCCGGACAAACCTGTTCAGGTTCT
GGCCAAGGAAGGCTGGCATCCTGGCGTTCTAGGTATTGTGGCGGGGCGTATCATGGAACAAATCAGTCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCTAAGGGTTCCGCTCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCGGGGATGACCCTTCCTGAAGAAAATCTTGGACGACT
ATCAGAGATTTTGTGTCATTATGTCTACGATAATGACATTGATACGAGTGCCAAAAATACGTTAAATTTAGACGAGGAGC
TCCAGCTCAGTGAGCTTAGCTTGGATACCATCAAGAGCCTTGAAAAATTAGCACCTTTTGGTATGGACAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACTATGGGACAAAACGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGACAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTTCGATCAAAAAACATGTCACTGCCTGAAGGTCTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTTCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
TTGGGAACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-431)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

68.071

100

0.683
  recJ Bacillus subtilis subsp. subtilis str. 168

37.532

100

0.398