Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   CupriaWKF_RS06935 Genome accession   NZ_CP119572
Coordinates   1457190..1458554 (+) Length   454 a.a.
NCBI ID   WP_276100238.1    Uniprot ID   -
Organism   Cupriavidus sp. WKF15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1452190..1463554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CupriaWKF_RS06920 (CupriaWKF_06920) - 1452838..1453806 (+) 969 WP_276100697.1 tripartite tricarboxylate transporter substrate binding protein -
  CupriaWKF_RS06925 (CupriaWKF_06925) lplT 1454202..1455521 (-) 1320 WP_276100236.1 lysophospholipid transporter LplT -
  CupriaWKF_RS06930 (CupriaWKF_06930) alr 1455978..1457099 (+) 1122 WP_276100237.1 alanine racemase -
  CupriaWKF_RS06935 (CupriaWKF_06935) radA 1457190..1458554 (+) 1365 WP_276100238.1 DNA repair protein RadA Machinery gene
  CupriaWKF_RS06940 (CupriaWKF_06940) - 1458558..1459136 (+) 579 WP_276100239.1 GNAT family N-acetyltransferase -
  CupriaWKF_RS06945 (CupriaWKF_06945) - 1459306..1459791 (+) 486 WP_276100240.1 disulfide bond formation protein B -
  CupriaWKF_RS06950 (CupriaWKF_06950) - 1459858..1461789 (-) 1932 WP_276100241.1 ATP-binding cassette domain-containing protein -
  CupriaWKF_RS06955 (CupriaWKF_06955) - 1462060..1463037 (+) 978 WP_276100699.1 MurR/RpiR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 48323.60 Da        Isoelectric Point: 6.9992

>NTDB_id=799696 CupriaWKF_RS06935 WP_276100238.1 1457190..1458554(+) (radA) [Cupriavidus sp. WKF15]
MAKTKTVYTCTECGGTVPRWAGQCPHCQQWNTLVETVAESGGAAKRFQPLAASATVQKLSEIDAADVPRFSSGIEEFDRV
LGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPTLGLLAEIQLEKIQATLE
AEKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSSGTTIILVGHVTKEGNLAGPRVLEHIVDTVLYFEGDT
HSSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEVQALVDTANVPNPR
RLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIR
PSPRGQERLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=799696 CupriaWKF_RS06935 WP_276100238.1 1457190..1458554(+) (radA) [Cupriavidus sp. WKF15]
TTGGCCAAGACCAAGACCGTCTACACCTGTACCGAATGCGGTGGCACCGTGCCGCGCTGGGCCGGCCAGTGCCCGCACTG
CCAGCAATGGAACACGCTGGTCGAGACCGTGGCGGAAAGCGGCGGTGCGGCCAAGCGCTTCCAGCCGCTGGCGGCATCGG
CAACGGTGCAAAAGCTCTCCGAGATCGATGCCGCGGACGTGCCGCGCTTTTCCAGCGGCATTGAAGAGTTCGACCGCGTG
CTCGGCGGCGGGCTGGTCGCGGGCGGGGTGGTGCTGATCGGCGGCGATCCGGGTATCGGCAAGTCGACGTTGCTGCTGCA
GGCACTCGCCAACCTGGCCGGGCAGCGCCGCGTGCTCTACGTGAGCGGCGAAGAATCCGGCGCCCAGATCGCGCTGCGTG
CCCAGCGCCTGGGCGTGGAAAGCCCGACGCTCGGCTTGCTGGCCGAAATCCAGCTGGAGAAGATCCAGGCCACGCTGGAG
GCGGAAAAGCCCGAGGTGGCCGTGATCGACTCGATCCAGACGCTTTACTCCGAAGCGCTGACCTCGGCGCCGGGCTCGGT
CGCGCAGGTGCGGGAATGCGCGGCGCAACTGACGCGCATTGCCAAGAGCAGCGGCACCACCATCATCCTGGTCGGCCACG
TGACCAAGGAGGGCAACCTCGCCGGTCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTATTTCGAAGGCGATACA
CATTCCTCGCACCGGTTGATCCGTGCGTTCAAGAACCGTTTCGGCGCGGTCAATGAACTGGGTGTGTTCGCCATGACGGA
GCGTGGCCTGCGCGGCATCAGCAACCCGTCGGCGCTGTTCCTGTCGCAGCATGAAGAGACGGTGCCGGGCTCCTGCGTGC
TGGTGACGCAGGAGGGCACGCGCCCGCTGCTCGTGGAAGTGCAGGCCCTGGTCGATACCGCCAACGTGCCCAACCCGCGC
CGCCTGGCCGTGGGCCTTGAACAGAACCGGCTGGCCATGCTGCTGGCGGTGCTGCACCGGCATGCGGGCATTGCCTGCTT
TGACCAGGACGTGTTCCTGAATGCCGTGGGCGGCGTAAAGATTACCGAGCCCGCGGCCGACCTGGCGGTGCTGCTGTCGA
TCCACTCGTCGATGCGCAACAAGCCGCTCCCGCGCGGCCTGGTAGTGTTCGGCGAGGTGGGGCTGGCCGGCGAGATCCGT
CCCAGCCCGCGCGGCCAGGAACGGCTGAAGGAAGCCGCCAAGCTCGGCTTCACGCTCGCGGTGATCCCCAAGGCCAACGC
GCCGAAGCAGAAGATCGACGGGCTCGAGGTGATCGCTGTCGAGCGCATCGAACAGGCGATCGATCGCGTACGTCATCTCG
ACTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(61-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50

99.559

0.498
  radA Streptococcus mitis SK321

46.696

100

0.467
  radA Streptococcus pneumoniae D39

46.593

100

0.467
  radA Streptococcus pneumoniae TIGR4

46.593

100

0.467
  radA Streptococcus pneumoniae R6

46.593

100

0.467
  radA Streptococcus pneumoniae Rx1

46.593

100

0.467
  radA Streptococcus mitis NCTC 12261

46.374

100

0.465