Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   RDV59_RS04230 Genome accession   NZ_CP133476
Coordinates   836567..837163 (+) Length   198 a.a.
NCBI ID   WP_002886148.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 831567..842163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS04210 (RDV59_04210) - 831568..832344 (+) 777 WP_038675583.1 alpha/beta fold hydrolase -
  RDV59_RS04215 (RDV59_04215) - 832495..833349 (+) 855 WP_038675584.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  RDV59_RS04220 (RDV59_04220) - 833353..834189 (+) 837 WP_038675587.1 NAD(P)H-hydrate dehydratase -
  RDV59_RS04225 (RDV59_04225) pbp2b 834311..836425 (+) 2115 WP_038675590.1 penicillin-binding protein PBP2B -
  RDV59_RS04230 (RDV59_04230) recR 836567..837163 (+) 597 WP_002886148.1 recombination mediator RecR Machinery gene
  RDV59_RS04235 (RDV59_04235) licT 837267..838106 (+) 840 WP_038675593.1 BglG family transcription antiterminator LicT -
  RDV59_RS04240 (RDV59_04240) ybeY 838324..838821 (+) 498 WP_002886021.1 rRNA maturation RNase YbeY -
  RDV59_RS04245 (RDV59_04245) - 838802..839206 (+) 405 WP_002885950.1 diacylglycerol kinase family protein -
  RDV59_RS04250 (RDV59_04250) era 839229..840128 (+) 900 WP_002886016.1 GTPase Era -
  RDV59_RS04255 (RDV59_04255) mutM 840173..840994 (+) 822 WP_021144488.1 DNA-formamidopyrimidine glycosylase -
  RDV59_RS04260 (RDV59_04260) coaE 840991..841584 (+) 594 WP_014634130.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21782.95 Da        Isoelectric Point: 4.5326

>NTDB_id=799690 RDV59_RS04230 WP_002886148.1 836567..837163(+) (recR) [Streptococcus salivarius strain LMG 11489]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCNICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEIIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=799690 RDV59_RS04230 WP_002886148.1 836567..837163(+) (recR) [Streptococcus salivarius strain LMG 11489]
ATGCTTTATCCTACTCCAATTGCGAAGCTGATTGATAGTTTTTCAAAACTCCCTGGAATCGGGGCTAAAACAGCGACCCG
CTTAGCTTTTTATACCATTAGCATGTCTGATGAAGATGTCAACGATTTCGCAAAAAACCTCTTGGCAGCAAAACGTGAAT
TGACTTATTGTTCGGTCTGTGGTCGTTTGACAGATGATGATCCATGTAATATTTGTACCGATGAAACCAGAGATCGTACT
AAGATTTTGGTTGTTGAAGATTCCAAAGATGTTTCAGCTATGGAAAAGATTCAGGAATACCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGACGATATTAACCTGAAAAGTTTGATTACCCGCCTTATGGACA
GCGAGGTTGACGAGATTATTATTGCCACTAATGCAACAGCAGATGGTGAGGCGACGTCTATGTATATTTCGCGTGTCCTT
AAACCTGCAGGAATCAAAGTGACTCGTTTAGCGCGTGGTTTGGCAGTCGGTTCTGACATTGAGTATGCTGATGAAGTGAC
CTTGCTAAGAGCTATCGAAAATCGAACAGAACTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.131

100

0.631
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.692

98.485

0.47