Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RDV59_RS03860 Genome accession   NZ_CP133476
Coordinates   759104..760840 (+) Length   578 a.a.
NCBI ID   WP_038675517.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 754104..765840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03835 (RDV59_03835) - 754491..755744 (+) 1254 WP_038675511.1 efflux RND transporter periplasmic adaptor subunit -
  RDV59_RS03840 (RDV59_03840) - 755755..756441 (+) 687 WP_155209737.1 ABC transporter ATP-binding protein -
  RDV59_RS03845 (RDV59_03845) - 756451..757659 (+) 1209 WP_038675513.1 ABC transporter permease -
  RDV59_RS03850 (RDV59_03850) rplJ 757950..758453 (+) 504 WP_038675515.1 50S ribosomal protein L10 -
  RDV59_RS03855 (RDV59_03855) rplL 758528..758896 (+) 369 WP_002886110.1 50S ribosomal protein L7/L12 -
  RDV59_RS03860 (RDV59_03860) rcrP 759104..760840 (+) 1737 WP_038675517.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03865 (RDV59_03865) rcrQ 760853..762640 (+) 1788 WP_038675519.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03870 (RDV59_03870) queA 762738..763781 (-) 1044 WP_038675521.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  RDV59_RS03875 (RDV59_03875) - 763932..764633 (+) 702 WP_038675523.1 glucosamine-6-phosphate deaminase -
  RDV59_RS03880 (RDV59_03880) - 764823..765806 (+) 984 WP_038675525.1 rhodanese-related sulfurtransferase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64877.81 Da        Isoelectric Point: 5.5902

>NTDB_id=799685 RDV59_RS03860 WP_038675517.1 759104..760840(+) (rcrP) [Streptococcus salivarius strain LMG 11489]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDADKLYTYAWVMFGVVLTGIVGRVLLSYAVSKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFAEQILKMGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETETKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIDSKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDKGEIVGRGRHEELMETNE
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=799685 RDV59_RS03860 WP_038675517.1 759104..760840(+) (rcrP) [Streptococcus salivarius strain LMG 11489]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACAGCGGCTATTTTGTTTGTTAT
TGCTAACCTGGGTCTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGGATTAACCGTGGAGATGCTGACAAGCTTTATA
CCTATGCTTGGGTCATGTTCGGTGTGGTCTTGACTGGGATTGTTGGTCGTGTGCTCTTGTCCTATGCGGTTAGTAAGTTG
ACGACCACAATGGTGCAGGTCATGCGTAATGACATTTACGCTAAGCTTCAGGAGTATTCCCACCATGAGTACGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCTGATGCTTTTGTTCTCATGCAATTTGCAGAACAGATTCTAAAGATGG
GTGTCATTACTCCTCTGATGATGGTTTCCAGTGTCTTCTTAATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATTTCCTTGCCTTTCCTAGCCGTAGTAGTCTGGTATGTAGCGGTAAAAACACGTCCGCTTTCTGAGAAGCAACAGGCAAC
ACTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGAGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTTGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAGCTCTTTAAATTAACTGGTTTGACTGAG
CCACTTTTTGTGCAAATCATCATCGCCATGATTGTGGCTATTGTTTGGTTTGCCCTCGAGCCTTTAGGTTCTGGGACTTT
GGCAATCGGGGATTTGGTTGCCTTTATTGAGTACAGTTTCCATGCGCTATTGTCTTTCCTTTTCCTAGCTAACCTCTTTA
CTATGTATCCTCGTACGGCGGTATCTAGTGAACGTCTGCAGGAGATTATGGATATGCCTATTTCTATCAATCCAAATGAA
GATGGAGTGACAGAGACTGAGACTAAGGGATATTTGGAGTTTGACAATGTGACTTTTGCCTATCCTGGTGAAACTGAGAG
TCCTGTCCTACACAATATTTCTTTCAAGGCTAAACCCGGTGAAACCATTGCCTTTATCGGATCTACGGGTTCAGGAAAAT
CATCACTTGTGCAGTTGATTCCACGCTTTTATGATGTGACACTTGGACGCATTCTTGTTGATGGTGTGGATGTTCGTGAC
TATAATCTGAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCTCTGCTCTTTACAGGAACCATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACGGATGTGGCTCAAGCCAAGGAATTCATCG
ACAGTAAGGAAGAACGCTACGATTCTCACTTGGCTGAGGGGGGTAGCAACCTTTCTGGGGGACAGAAGCAGCGTTTGTCA
ATTGCTAGAGCGGTGGTTAAACGTCCTGACCTTTACATCTTTGACGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTGAAAGAAGTGACCCAGGATGCGACAGTCTTGATTGTTGCTCAACGTGTGGGTACTATCATGG
ATGCAGACCAGATTATCGTTCTTGATAAGGGTGAAATCGTGGGTCGTGGTCGCCACGAAGAGCTTATGGAAACCAATGAG
ATTTACCGTGAAATTGCTAATTCACAATTGAATCAAAAGAGTCTTACAGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.15

92.215

0.37