Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   RDV59_RS03310 Genome accession   NZ_CP133476
Coordinates   634730..636508 (+) Length   592 a.a.
NCBI ID   WP_038675389.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 629730..641508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS03290 (RDV59_03290) - 630184..631725 (+) 1542 WP_223896503.1 YfhO family protein -
  RDV59_RS03295 (RDV59_03295) - 631883..632293 (+) 411 WP_038675386.1 peptide deformylase -
  RDV59_RS03300 (RDV59_03300) rcrR 632479..632922 (+) 444 WP_002885568.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  RDV59_RS03305 (RDV59_03305) rcrP 632926..634740 (+) 1815 WP_038675388.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03310 (RDV59_03310) rcrQ 634730..636508 (+) 1779 WP_038675389.1 ABC transporter ATP-binding protein Regulator
  RDV59_RS03315 (RDV59_03315) - 636616..637239 (+) 624 WP_037599568.1 GNAT family N-acetyltransferase -
  RDV59_RS03320 (RDV59_03320) - 637387..638010 (+) 624 WP_038675392.1 GTP pyrophosphokinase family protein -
  RDV59_RS03325 (RDV59_03325) - 638012..638689 (+) 678 WP_038675394.1 response regulator transcription factor -
  RDV59_RS03330 (RDV59_03330) - 638703..639926 (+) 1224 WP_038675396.1 HAMP domain-containing sensor histidine kinase -
  RDV59_RS03335 (RDV59_03335) pyrH 640163..640900 (+) 738 WP_002885551.1 UMP kinase -
  RDV59_RS03340 (RDV59_03340) frr 640915..641472 (+) 558 WP_014633971.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65117.01 Da        Isoelectric Point: 4.8781

>NTDB_id=799677 RDV59_RS03310 WP_038675389.1 634730..636508(+) (rcrQ) [Streptococcus salivarius strain LMG 11489]
MENKPETSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=799677 RDV59_RS03310 WP_038675389.1 634730..636508(+) (rcrQ) [Streptococcus salivarius strain LMG 11489]
ATGGAAAATAAGCCAGAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACAAAAATGGGGACGATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCCATTGTGGGTTACTTACAAAGCTTTACCGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCTCTTAATTATTTTGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGTCAAGGTTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTAGCAGCCATTATTATGATGTTTTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTTATCATGGGCTTCTCACAACCCCTTTTCAAACGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACGGGTCAAGCAGTCGTAACGAGTTACAATGCTGCTCAAGAAAGTAGTCAAGCTTTCAAGGGA
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCTATCAAAGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACTGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAAACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCGGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTCGATACGAATGACATGAAGCGTGAAACTGTTCATGACCA
ATTCTCAATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGACAGAAGCAGCTCTTGACCATTGCACGTGCGCTTCTTAAGGATGCCCC
TCTCCTTATCTTGGATGAGGCGACATCATCTGTCGACACTCGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689