Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   PZ486_RS06890 Genome accession   NZ_CP119571
Coordinates   1338050..1338781 (+) Length   243 a.a.
NCBI ID   WP_205401068.1    Uniprot ID   -
Organism   Staphylococcus aureus strain N08CSA36     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1333050..1343781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PZ486_RS06860 (PZ486_06860) - 1333270..1333896 (+) 627 WP_000522384.1 nitroreductase family protein -
  PZ486_RS06865 (PZ486_06865) - 1334257..1335042 (+) 786 WP_000867940.1 carbon-nitrogen family hydrolase -
  PZ486_RS06870 (PZ486_06870) hld 1335639..1335719 (-) 81 WP_000046022.1 delta-hemolysin -
  PZ486_RS06875 (PZ486_06875) - 1336009..1336572 (+) 564 WP_001105696.1 accessory gene regulator ArgB-like protein -
  PZ486_RS06880 (PZ486_06880) - 1336575..1336718 (+) 144 WP_001094921.1 cyclic lactone autoinducer peptide -
  PZ486_RS06885 (PZ486_06885) - 1336748..1338031 (+) 1284 WP_000447888.1 sensor histidine kinase -
  PZ486_RS06890 (PZ486_06890) agrA 1338050..1338781 (+) 732 WP_205401068.1 LytTR family DNA-binding domain-containing protein Regulator
  PZ486_RS06895 (PZ486_06895) - 1338845..1338954 (+) 110 Protein_1333 hypothetical protein -
  PZ486_RS06900 (PZ486_06900) - 1339142..1340101 (-) 960 WP_001253314.1 carbohydrate kinase -
  PZ486_RS06905 (PZ486_06905) - 1340098..1341582 (-) 1485 WP_000141414.1 sucrose-6-phosphate hydrolase -
  PZ486_RS06910 (PZ486_06910) - 1341731..1342681 (-) 951 WP_031588340.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 28608.71 Da        Isoelectric Point: 6.4957

>NTDB_id=799675 PZ486_RS06890 WP_205401068.1 1338050..1338781(+) (agrA) [Staphylococcus aureus strain N08CSA36]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSRDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKYNK
IIR

Nucleotide


Download         Length: 732 bp        

>NTDB_id=799675 PZ486_RS06890 WP_205401068.1 1338050..1338781(+) (agrA) [Staphylococcus aureus strain N08CSA36]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATTAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACCTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAAGATGATCCAGCAGAATTAAGAACTCGAATTATAGATTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAGAGATAATAGCGTTGAAACGATTGAATTAAAACGTGGCAGTAATTCAGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACAAAATCTCACAGACTCATTGCCCATTTAGATAACCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGTTTCTTTAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATAG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTTAGAAACGTTAAAAAATATAATAAG
ATAATAAGATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-241)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

99.578

97.531

0.971