Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   RDV59_RS01220 Genome accession   NZ_CP133476
Coordinates   215200..215973 (+) Length   257 a.a.
NCBI ID   WP_038674979.1    Uniprot ID   -
Organism   Streptococcus salivarius strain LMG 11489     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 210200..220973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV59_RS01200 (RDV59_01200) mreD 210642..211166 (+) 525 WP_022495821.1 rod shape-determining protein MreD -
  RDV59_RS01205 (RDV59_01205) - 211251..212768 (+) 1518 WP_038674975.1 CHAP domain-containing protein -
  RDV59_RS01210 (RDV59_01210) - 212980..213945 (+) 966 WP_002886286.1 ribose-phosphate diphosphokinase -
  RDV59_RS01215 (RDV59_01215) - 214038..215213 (+) 1176 WP_038674977.1 pyridoxal phosphate-dependent aminotransferase -
  RDV59_RS01220 (RDV59_01220) recO 215200..215973 (+) 774 WP_038674979.1 DNA repair protein RecO Machinery gene
  RDV59_RS01225 (RDV59_01225) plsX 216185..217189 (+) 1005 WP_038674981.1 phosphate acyltransferase PlsX -
  RDV59_RS01230 (RDV59_01230) - 217189..217434 (+) 246 WP_004181960.1 phosphopantetheine-binding protein -
  RDV59_RS01235 (RDV59_01235) purC 217693..218400 (+) 708 WP_002886293.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29692.77 Da        Isoelectric Point: 4.9545

>NTDB_id=799652 RDV59_RS01220 WP_038674979.1 215200..215973(+) (recO) [Streptococcus salivarius strain LMG 11489]
MQKLESRGLVLFNRNYRENDKLVKIFTEQAGKRMFFVRGGGSGKLSAVIQPLTIAEFMMTVNDEGLSFIEDYSQAESFKE
ITSDIFKLSYATYLASLTDAAIADGVADAQLFAFLEKTLELMEEGLDYEILTNIFEIQVLDRFGVRLNFHECVFCHRVGL
PFDFSYKFSGLLCPNHYAEDERRSHLDPNVPYLLDRFQGLSFEELRSISVKDDMKRKLRHFIDDLYDNYVGIHLKSKKFI
DNLNSWGHIINKEDSAD

Nucleotide


Download         Length: 774 bp        

>NTDB_id=799652 RDV59_RS01220 WP_038674979.1 215200..215973(+) (recO) [Streptococcus salivarius strain LMG 11489]
ATGCAGAAGCTTGAGAGTAGAGGGCTTGTCCTCTTCAATCGTAATTATCGTGAGAACGATAAGCTAGTTAAGATTTTTAC
CGAGCAAGCTGGTAAACGGATGTTTTTTGTTAGAGGTGGTGGGTCAGGTAAATTAAGTGCTGTGATTCAACCTTTAACCA
TCGCTGAATTCATGATGACTGTAAATGATGAGGGCTTATCTTTCATAGAGGATTATAGCCAAGCAGAATCCTTTAAGGAA
ATTACAAGCGATATTTTCAAGCTGTCTTATGCGACTTATTTAGCTTCTCTGACGGATGCTGCTATTGCTGACGGTGTGGC
AGATGCACAATTATTTGCATTCTTGGAGAAGACGCTTGAATTAATGGAAGAAGGCTTGGATTATGAAATCTTGACTAATA
TCTTTGAGATTCAGGTTTTAGACCGTTTCGGTGTACGATTGAATTTTCACGAGTGTGTCTTTTGCCATCGTGTGGGGCTT
CCTTTTGATTTTTCGTATAAGTTCTCGGGGCTACTTTGTCCAAATCACTATGCAGAGGATGAAAGGCGTAGTCACTTGGA
TCCTAATGTACCTTATCTTTTAGATCGTTTTCAGGGGCTTTCTTTTGAGGAATTGAGAAGCATATCTGTTAAGGATGACA
TGAAACGAAAGCTACGACATTTTATTGATGACCTCTATGATAATTATGTTGGAATACATCTTAAAAGTAAGAAGTTTATT
GATAATCTAAATTCTTGGGGTCATATTATAAATAAAGAAGATAGTGCTGACTAG

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

62.451

98.444

0.615