Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | PZ486_RS00565 | Genome accession | NZ_CP119571 |
| Coordinates | 103071..103499 (+) | Length | 142 a.a. |
| NCBI ID | WP_031584877.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain N08CSA36 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 98071..108499
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PZ486_RS00505 (PZ486_00505) | - | 98933..99172 (+) | 240 | WP_016187264.1 | helix-turn-helix transcriptional regulator | - |
| PZ486_RS00510 (PZ486_00510) | - | 99187..99348 (+) | 162 | WP_001153175.1 | hypothetical protein | - |
| PZ486_RS00515 (PZ486_00515) | - | 99341..99577 (-) | 237 | WP_021285963.1 | hypothetical protein | - |
| PZ486_RS00520 (PZ486_00520) | - | 99642..100382 (+) | 741 | WP_001576117.1 | phage antirepressor KilAC domain-containing protein | - |
| PZ486_RS00525 (PZ486_00525) | - | 100407..100610 (+) | 204 | Protein_103 | hypothetical protein | - |
| PZ486_RS00530 (PZ486_00530) | - | 100578..100823 (-) | 246 | WP_016187267.1 | hypothetical protein | - |
| PZ486_RS00535 (PZ486_00535) | - | 100894..101115 (+) | 222 | WP_000977381.1 | hypothetical protein | - |
| PZ486_RS00540 (PZ486_00540) | - | 101108..101269 (+) | 162 | WP_000048124.1 | DUF1270 family protein | - |
| PZ486_RS00545 (PZ486_00545) | - | 101372..101674 (+) | 303 | WP_000163429.1 | DUF2482 family protein | - |
| PZ486_RS00550 (PZ486_00550) | - | 101679..101939 (+) | 261 | WP_021285962.1 | DUF1108 family protein | - |
| PZ486_RS00555 (PZ486_00555) | - | 101954..102433 (+) | 480 | WP_016187438.1 | siphovirus Gp157 family protein | - |
| PZ486_RS00560 (PZ486_00560) | - | 102433..103071 (+) | 639 | WP_001043063.1 | ERF family protein | - |
| PZ486_RS00565 (PZ486_00565) | ssbA | 103071..103499 (+) | 429 | WP_031584877.1 | single-stranded DNA-binding protein | Machinery gene |
| PZ486_RS00570 (PZ486_00570) | - | 103513..104187 (+) | 675 | WP_031584874.1 | putative HNHc nuclease | - |
| PZ486_RS00575 (PZ486_00575) | - | 104180..104932 (+) | 753 | WP_031584871.1 | DnaD domain protein | - |
| PZ486_RS00580 (PZ486_00580) | - | 104932..105288 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| PZ486_RS00585 (PZ486_00585) | - | 105285..106526 (+) | 1242 | WP_031584867.1 | DnaB helicase C-terminal domain-containing protein | - |
| PZ486_RS00590 (PZ486_00590) | - | 106523..106738 (+) | 216 | WP_031584864.1 | hypothetical protein | - |
| PZ486_RS00595 (PZ486_00595) | - | 106741..106962 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| PZ486_RS00600 (PZ486_00600) | - | 106972..107379 (+) | 408 | WP_029549553.1 | RusA family crossover junction endodeoxyribonuclease | - |
| PZ486_RS00605 (PZ486_00605) | - | 107379..107564 (+) | 186 | WP_017804689.1 | DUF3113 family protein | - |
| PZ486_RS00610 (PZ486_00610) | - | 107565..107927 (+) | 363 | WP_000536051.1 | SA1788 family PVL leukocidin-associated protein | - |
| PZ486_RS00615 (PZ486_00615) | - | 107927..108181 (+) | 255 | WP_031584845.1 | DUF3310 domain-containing protein | - |
| PZ486_RS00620 (PZ486_00620) | - | 108181..108429 (+) | 249 | WP_078069534.1 | SAV1978 family virulence-associated passenger protein | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15978.55 Da Isoelectric Point: 6.9799
>NTDB_id=799646 PZ486_RS00565 WP_031584877.1 103071..103499(+) (ssbA) [Staphylococcus aureus strain N08CSA36]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVAADSVQFLEPKNSNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF
Nucleotide
Download Length: 429 bp
>NTDB_id=799646 PZ486_RS00565 WP_031584877.1 103071..103499(+) (ssbA) [Staphylococcus aureus strain N08CSA36]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTGTTTGTTACAGAAGTAGCAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAGCAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
59.302 |
100 |
0.718 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.606 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
74.648 |
0.444 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.657 |
100 |
0.43 |
| ssbA | Streptococcus mutans UA159 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
41.549 |
100 |
0.415 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.845 |
100 |
0.408 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.845 |
100 |
0.408 |