Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RDV58_RS09315 Genome accession   NZ_CP133475
Coordinates   1879716..1880351 (-) Length   211 a.a.
NCBI ID   WP_002264906.1    Uniprot ID   Q8DVU8
Organism   Streptococcus mutans strain LMG 14558     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1874716..1885351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS09295 (RDV58_09280) - 1875603..1876316 (-) 714 WP_002280297.1 ABC transporter permease -
  RDV58_RS09300 (RDV58_09285) - 1876309..1877154 (-) 846 WP_002280296.1 ABC transporter ATP-binding protein -
  RDV58_RS09305 (RDV58_09290) - 1877616..1877846 (+) 231 WP_002268030.1 DNA-dependent RNA polymerase subunit epsilon -
  RDV58_RS09310 (RDV58_09295) rnjA 1877848..1879530 (+) 1683 WP_002264907.1 ribonuclease J1 -
  RDV58_RS09315 (RDV58_09300) lytF 1879716..1880351 (-) 636 WP_002264906.1 CHAP domain-containing protein Regulator
  RDV58_RS09320 (RDV58_09305) - 1880499..1881935 (-) 1437 WP_002262483.1 glutamate synthase subunit beta -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22470.57 Da        Isoelectric Point: 4.1028

>NTDB_id=799625 RDV58_RS09315 WP_002264906.1 1879716..1880351(-) (lytF) [Streptococcus mutans strain LMG 14558]
MKKQFLEKAVFTVAATAATVVLGNKMADADTYTLQEGDSFFSVAQRYHMDAYELASMNGKDITSLILPGQTLTVNGSAAP
DNQAAAPTDTTQATTETNDANANTYPVGQCTWGVKAVATWAGDWWGNGGDWASSASAQGYTVGNTPAVGSIMCWTDGGYG
HVAYVTAVGEDGKVQVLESNYKDQQWVDNYRGWFDPNNSGTPGSVSYIYPN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=799625 RDV58_RS09315 WP_002264906.1 1879716..1880351(-) (lytF) [Streptococcus mutans strain LMG 14558]
ATGAAAAAACAATTTTTGGAAAAAGCTGTGTTTACTGTTGCGGCTACGGCAGCAACAGTTGTTTTAGGAAATAAAATGGC
TGATGCAGACACTTATACTCTTCAAGAAGGAGATTCTTTTTTCAGTGTTGCTCAACGATATCATATGGATGCTTATGAGT
TAGCTTCTATGAATGGAAAAGATATTACCAGTCTGATTTTGCCGGGTCAGACTTTAACTGTTAATGGTTCGGCAGCACCG
GATAATCAGGCGGCAGCGCCAACTGACACTACGCAAGCAACCACTGAAACGAATGATGCGAATGCCAATACTTATCCTGT
TGGTCAATGTACTTGGGGGGTTAAAGCTGTTGCAACTTGGGCAGGCGACTGGTGGGGCAATGGCGGTGATTGGGCCTCTA
GTGCTTCTGCACAAGGTTACACTGTCGGTAACACTCCGGCAGTAGGGTCTATTATGTGTTGGACAGATGGTGGTTATGGA
CATGTTGCCTATGTCACAGCTGTTGGTGAAGATGGTAAAGTTCAAGTACTGGAATCCAATTATAAAGATCAACAATGGGT
TGATAACTATCGTGGTTGGTTTGATCCAAATAATAGTGGAACACCAGGCAGTGTCAGTTATATTTATCCTAACTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(102-180)

LysM domain (LysM)

(32-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DVU8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

55.072

65.403

0.36