Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   RDV58_RS08290 Genome accession   NZ_CP133475
Coordinates   1678212..1679870 (-) Length   552 a.a.
NCBI ID   WP_002280392.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673212..1684870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS08260 (RDV58_08245) - 1673814..1674932 (+) 1119 WP_002280164.1 Acg family FMN-binding oxidoreductase -
  RDV58_RS08265 (RDV58_08250) - 1675123..1675260 (+) 138 Protein_1585 IS3 family transposase -
  RDV58_RS08270 (RDV58_08255) - 1675352..1675627 (-) 276 WP_002262099.1 HU family DNA-binding protein -
  RDV58_RS08275 (RDV58_08260) - 1675724..1676323 (-) 600 WP_002262100.1 YpmS family protein -
  RDV58_RS08280 (RDV58_08265) - 1676298..1677155 (-) 858 WP_002262101.1 SGNH/GDSL hydrolase family protein -
  RDV58_RS08285 (RDV58_08270) - 1677148..1677987 (-) 840 WP_002268053.1 DegV family protein -
  RDV58_RS08290 (RDV58_08275) recN 1678212..1679870 (-) 1659 WP_002280392.1 DNA repair protein RecN Machinery gene
  RDV58_RS08295 (RDV58_08280) - 1679887..1680351 (-) 465 WP_002264713.1 arginine repressor -
  RDV58_RS08300 (RDV58_08285) - 1680338..1681165 (-) 828 WP_002262105.1 TlyA family rRNA (cytidine-2'-O)-methyltransferase -
  RDV58_RS08305 (RDV58_08290) - 1681158..1682027 (-) 870 WP_002280391.1 polyprenyl synthetase family protein -
  RDV58_RS08310 (RDV58_08295) - 1682024..1682245 (-) 222 WP_002262107.1 exodeoxyribonuclease VII small subunit -
  RDV58_RS08315 (RDV58_08300) xseA 1682220..1683563 (-) 1344 WP_002264710.1 exodeoxyribonuclease VII large subunit -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62687.14 Da        Isoelectric Point: 5.1194

>NTDB_id=799609 RDV58_RS08290 WP_002280392.1 1678212..1679870(-) (recN) [Streptococcus mutans strain LMG 14558]
MLLEIAIKNFAIIEEISLNFEKGMTVLTGETGAGKSIVIDAMNMMLGSRASIDVIRHGSPKAEIEGFFSVDKNPSLEQLL
ADQGIAFSDELIIRREILQNGRSISRINGQMVNLATLRAVGQYLVDIHGQHDQEELMRPQKHIQLLDEFGDEVFQVSKQH
YQDLFDRYRNLRKRVLNKRKNEQEHQARIEMLEYQIGEIEAANLQSGEDTKLLKQRDKLMNHKLIVDTLTNAYVLLDNED
FSSLTNVRSAMNDLQSLEEYDAEYKDLSNNLSESYYILEDVSKRLETILDHMDFDANTLVKLEARLDVINTITRKYGGSV
DDVLAYFDNISKEYNHLTGNDLAFDDMERELKVLERSLLEAAAQLSQKRHAIAETLSQEIKQELKDLYMDKADFKVVFTK
GKFNREGNETVAFHISTNPGEDFKPLVKVASGGELSRLMLAIKSAFSRREDKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
NHGQVLAISHIPQVIAISDYQYFIEKQSSKATTVSTVRLLNQEERIEEIAKMLAGDNVTQAARQQAKELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=799609 RDV58_RS08290 WP_002280392.1 1678212..1679870(-) (recN) [Streptococcus mutans strain LMG 14558]
ATGCTTTTAGAAATTGCCATTAAAAATTTTGCTATTATTGAAGAAATCTCACTCAATTTTGAAAAGGGAATGACTGTTCT
GACCGGTGAAACAGGTGCAGGGAAGTCTATTGTCATTGATGCCATGAATATGATGCTAGGCAGTAGAGCCAGCATAGATG
TTATTCGTCATGGCAGTCCTAAAGCAGAGATTGAGGGTTTTTTCTCTGTGGATAAAAATCCTTCTTTAGAGCAGTTACTG
GCTGATCAGGGAATTGCTTTTTCAGATGAGCTAATCATTCGCCGTGAGATTTTACAAAATGGGCGCAGTATTAGTCGTAT
CAATGGTCAAATGGTTAATCTGGCAACTCTGCGTGCCGTTGGGCAGTATTTAGTTGATATTCATGGACAGCATGATCAAG
AAGAACTGATGCGGCCGCAAAAGCATATTCAGTTGTTGGATGAATTTGGTGATGAGGTATTTCAGGTAAGCAAGCAGCAT
TATCAGGACTTATTTGATCGCTATCGGAACTTACGTAAGCGCGTCTTGAATAAACGTAAGAATGAGCAAGAACATCAAGC
ACGTATTGAAATGCTGGAGTATCAGATAGGAGAGATTGAAGCAGCAAACTTACAATCTGGTGAGGATACCAAGCTCTTAA
AACAACGTGATAAACTTATGAATCATAAGCTTATTGTTGATACCTTAACCAATGCTTATGTTTTACTTGATAATGAAGAT
TTTTCGAGTTTGACCAATGTTCGTTCAGCTATGAATGATTTGCAGAGTTTGGAAGAATATGATGCTGAGTACAAGGATTT
ATCCAATAATCTCAGCGAATCTTACTATATTTTAGAAGATGTTAGCAAACGTCTAGAGACCATACTGGATCATATGGATT
TTGATGCCAATACTTTGGTTAAACTTGAAGCACGTCTTGATGTTATCAACACCATCACGCGTAAGTATGGTGGTTCAGTT
GATGATGTTTTGGCTTATTTTGACAATATCAGTAAGGAATACAATCATTTGACGGGAAATGACCTTGCTTTTGATGATAT
GGAAAGAGAACTAAAAGTTTTGGAGCGCTCACTATTAGAAGCAGCAGCTCAATTGAGTCAAAAACGCCATGCCATTGCGG
AAACCTTGTCTCAGGAGATTAAGCAGGAACTAAAAGATCTCTACATGGATAAGGCTGATTTTAAAGTTGTTTTTACTAAA
GGAAAATTTAATCGCGAGGGAAATGAAACAGTCGCTTTTCATATTTCGACTAATCCTGGCGAAGACTTTAAGCCTTTGGT
CAAAGTCGCTTCTGGTGGAGAGCTGTCTCGCCTCATGTTAGCCATTAAGTCAGCTTTTTCACGTCGTGAAGATAAGACTA
GCATTGTTTTTGATGAAGTTGATACAGGTGTTTCAGGACGTGTCGCGCAGGCTATTGCTCAAAAAATTTACAAAATAGGC
AATCACGGTCAAGTTTTAGCTATTTCCCATATCCCGCAAGTCATTGCCATCAGTGATTATCAGTACTTTATTGAAAAACA
AAGCAGCAAAGCCACAACTGTCTCAACGGTTCGCCTTTTAAATCAAGAGGAAAGAATTGAAGAAATCGCTAAGATGTTGG
CAGGGGATAATGTGACCCAAGCTGCGCGCCAGCAAGCTAAAGAACTATTAAAAAAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

42.707

100

0.44