Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   RDV58_RS06870 Genome accession   NZ_CP133475
Coordinates   1369515..1371251 (-) Length   578 a.a.
NCBI ID   WP_002280367.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364515..1376251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06860 (RDV58_06850) - 1366696..1367616 (-) 921 WP_002280369.1 AEC family transporter -
  RDV58_RS06865 (RDV58_06855) rcrQ 1367732..1369504 (-) 1773 WP_002280368.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06870 (RDV58_06860) rcrP 1369515..1371251 (-) 1737 WP_002280367.1 ABC transporter ATP-binding protein Regulator
  RDV58_RS06875 (RDV58_06865) - 1371708..1373576 (-) 1869 WP_002280366.1 ABC-F family ATP-binding cassette domain-containing protein -
  RDV58_RS06880 (RDV58_06870) - 1373579..1374784 (-) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  RDV58_RS06885 (RDV58_06875) dapB 1374781..1375548 (-) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 65122.02 Da        Isoelectric Point: 9.4915

>NTDB_id=799597 RDV58_RS06870 WP_002280367.1 1369515..1371251(-) (rcrP) [Streptococcus mutans strain LMG 14558]
MIYIWSYLKKYPKWLLLDILGALLFVVVNLGLPTALARMIDQGITPADKQALYFWAFIMFIIVLLGIVGRITLAYASGRL
TTTMIRDMRNDMYDKLQEYSHHEYKKIGVSSLVTRMTSDAFVLMQFAEMSLRMGIVTPLMMVSSVIMVLVTSPSLAWIVV
FAIPFLILVIYYVAAKTRPLSEKQQNTLDKINQYVRENLTGLRVIRAFARENFQEERFDLKNRGYEKTSNRLFKLTGLTE
ALFVQIIIIMIVAIVWFSLDPLKQGTIKIGDLVAFIEYSFHALFSFLIFANIFTMYPRMAVSSKRIQEVMAMPISIDPNI
NGIKETKSKGYLEFDNVTFAYPGETESPVLHDISFKARPGETIAFIGSTGSGKSSLVNLIPRFYDVTLGRILVDGVDVRD
YNLKALRQKIGFIPQKALLFTGTIGENLKYGKKDASLAELHSAADIAQAKEFIESRAEKFDSHLAEGGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYKTDSLLRQRLKEVTGNSTVLIVAQRVGTIMNADQIIVLDEGEIVGRGSHDELMKSNA
IYREIANSQLNQQSLTQE

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=799597 RDV58_RS06870 WP_002280367.1 1369515..1371251(-) (rcrP) [Streptococcus mutans strain LMG 14558]
ATGATATATATTTGGTCTTATTTAAAAAAATATCCCAAATGGTTACTATTGGACATTCTTGGTGCCCTTTTATTTGTTGT
TGTCAATTTGGGCTTACCGACAGCTCTGGCACGAATGATTGATCAAGGGATCACACCGGCTGATAAACAAGCTCTTTATT
TTTGGGCTTTTATTATGTTTATCATTGTTCTTTTAGGAATAGTCGGGCGTATTACCCTAGCCTATGCTTCTGGCAGATTA
ACCACGACCATGATTCGCGATATGCGCAATGATATGTATGATAAATTGCAAGAGTACTCCCATCACGAATATAAGAAAAT
TGGTGTCTCTTCCTTGGTTACACGTATGACCAGTGACGCCTTTGTACTTATGCAATTTGCAGAAATGTCCTTGCGGATGG
GAATTGTTACCCCCTTGATGATGGTCTCAAGTGTTATTATGGTTTTGGTGACTAGCCCATCTTTGGCTTGGATTGTAGTA
TTTGCTATTCCTTTTTTGATACTGGTGATTTATTATGTTGCGGCAAAAACACGCCCTTTGTCTGAAAAGCAGCAAAATAC
GCTTGACAAGATTAATCAGTACGTTCGTGAAAACTTAACGGGTCTACGTGTTATTCGTGCCTTTGCGCGTGAAAATTTTC
AAGAAGAACGCTTTGACTTAAAAAACAGAGGTTATGAAAAGACTTCTAACAGACTATTTAAATTAACCGGACTCACAGAA
GCCCTATTTGTTCAGATTATTATTATCATGATAGTAGCTATTGTCTGGTTTTCATTAGATCCGCTTAAGCAAGGGACTAT
CAAGATTGGTGATCTGGTTGCTTTTATTGAGTATAGTTTTCATGCTCTCTTTTCTTTTTTAATATTTGCTAATATTTTCA
CTATGTATCCGCGAATGGCTGTATCTAGCAAACGTATCCAAGAGGTAATGGCTATGCCTATTTCCATTGATCCCAATATA
AATGGCATTAAGGAGACTAAATCCAAAGGCTATTTGGAATTTGACAATGTGACCTTTGCCTATCCCGGTGAGACCGAAAG
TCCTGTCTTGCATGATATTTCTTTTAAAGCTAGACCGGGAGAAACGATTGCTTTTATTGGCAGTACAGGTTCAGGAAAGT
CGTCGCTTGTTAATTTGATTCCCCGTTTTTATGATGTAACTTTGGGTCGGATTCTGGTTGATGGTGTGGATGTCCGTGAC
TATAATCTTAAGGCTCTGCGTCAGAAAATTGGTTTTATTCCGCAAAAAGCGCTGCTATTTACTGGAACCATTGGAGAAAA
TCTTAAGTATGGGAAAAAGGATGCTAGTTTGGCTGAACTGCATTCAGCTGCTGATATTGCACAAGCTAAAGAATTCATCG
AAAGTCGAGCTGAGAAATTTGATAGCCACTTAGCAGAAGGCGGCAGCAATCTTTCAGGGGGACAGAAGCAGCGCTTGTCT
ATTGCGCGTGCAGTTGTTAAGAAACCAGATATCTATATTTTTGATGATTCCTTTTCAGCCTTAGATTATAAGACGGATAG
TCTCCTGCGTCAGCGTTTGAAAGAAGTGACAGGCAATTCAACAGTGCTCATTGTAGCCCAACGTGTCGGAACTATTATGA
ATGCTGACCAGATTATTGTACTGGATGAAGGAGAAATTGTTGGTCGCGGCAGCCATGATGAACTCATGAAGTCCAATGCC
ATTTATCGTGAAATTGCCAACTCACAGCTCAATCAGCAAAGTTTAACGCAAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(17-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.02

95.329

0.372