Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   RDV58_RS06420 Genome accession   NZ_CP133475
Coordinates   1266901..1267572 (-) Length   223 a.a.
NCBI ID   WP_002263237.1    Uniprot ID   Q8DUD1
Organism   Streptococcus mutans strain LMG 14558     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1261901..1272572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS06400 (RDV58_06390) - 1262990..1263679 (+) 690 WP_002269136.1 GntR family transcriptional regulator -
  RDV58_RS06405 (RDV58_06395) citG 1263685..1264575 (+) 891 WP_002265082.1 triphosphoribosyl-dephospho-CoA synthase CitG -
  RDV58_RS06410 (RDV58_06400) citC 1264751..1265800 (+) 1050 WP_002280281.1 [citrate (pro-3S)-lyase] ligase -
  RDV58_RS06415 (RDV58_06405) - 1265951..1266904 (-) 954 WP_002280280.1 HAMP domain-containing sensor histidine kinase -
  RDV58_RS06420 (RDV58_06410) braR 1266901..1267572 (-) 672 WP_002263237.1 response regulator transcription factor Regulator
  RDV58_RS06425 (RDV58_06415) - 1267614..1269617 (-) 2004 WP_002280279.1 ABC transporter permease -
  RDV58_RS06430 (RDV58_06420) - 1269619..1270371 (-) 753 WP_002263239.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25802.90 Da        Isoelectric Point: 5.1691

>NTDB_id=799588 RDV58_RS06420 WP_002263237.1 1266901..1267572(-) (braR) [Streptococcus mutans strain LMG 14558]
MLKQEKIYLVEDDTTIVNLLKNHLGQHYQVKSVDNFRAILQEVKEFKPDLILMDITLPYFNGFYWTTEIRKSMTMPIIFI
SSADEEMNAVMAMNMGGDDFLSKPFSLPILDAKIAAFLRRANEFTKQGHQIEEFELTLDGVFSNLERQETIQLTPTETKI
LSLLIDYKGEVVTKEALLNRLWEGEEFIDQNTLSVNMTRLRKKVLSVSFDKIHTVRGVGYLIK

Nucleotide


Download         Length: 672 bp        

>NTDB_id=799588 RDV58_RS06420 WP_002263237.1 1266901..1267572(-) (braR) [Streptococcus mutans strain LMG 14558]
ATGCTAAAGCAAGAAAAAATTTACTTGGTTGAAGATGATACAACCATTGTCAATCTTTTAAAGAATCATTTGGGACAACA
CTATCAAGTTAAAAGCGTTGATAACTTTAGGGCTATCTTGCAAGAAGTTAAAGAATTTAAACCCGATTTAATTCTGATGG
ATATTACTTTGCCCTATTTCAATGGCTTTTATTGGACTACTGAAATCAGAAAGAGCATGACCATGCCCATTATCTTTATT
TCCAGTGCTGATGAAGAAATGAATGCAGTAATGGCTATGAATATGGGAGGTGATGATTTTTTGAGCAAGCCTTTCTCGCT
GCCTATTTTGGATGCCAAAATCGCTGCTTTCTTGCGCCGTGCTAACGAGTTCACTAAGCAAGGCCATCAAATTGAAGAGT
TTGAATTAACGTTAGATGGTGTATTCTCAAATTTAGAAAGACAAGAGACTATCCAATTGACTCCAACAGAAACGAAAATT
CTTTCCTTACTTATTGATTATAAAGGAGAGGTTGTCACTAAGGAAGCTCTTCTCAACCGACTATGGGAGGGAGAGGAATT
TATTGATCAAAACACGCTTAGTGTTAATATGACACGTCTTCGTAAAAAGGTTCTATCAGTAAGTTTTGATAAGATTCATA
CAGTAAGAGGAGTAGGGTATTTAATTAAATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-114)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(149-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DUD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

43.498

100

0.435