Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   RDV58_RS04480 Genome accession   NZ_CP133475
Coordinates   860617..861096 (+) Length   159 a.a.
NCBI ID   WP_002267187.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 855617..866096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS04455 (RDV58_04455) - 856012..857115 (+) 1104 WP_002267744.1 FAD-binding oxidoreductase -
  RDV58_RS04460 (RDV58_04460) rfbA 857180..858049 (+) 870 WP_002263084.1 glucose-1-phosphate thymidylyltransferase RfbA -
  RDV58_RS04465 (RDV58_04465) - 858051..858647 (+) 597 WP_002279906.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  RDV58_RS04470 (RDV58_04470) - 858710..858883 (+) 174 WP_002263086.1 hypothetical protein -
  RDV58_RS04475 (RDV58_04475) rfbB 859276..860322 (+) 1047 WP_002267186.1 dTDP-glucose 4,6-dehydratase -
  RDV58_RS04480 (RDV58_04480) mutX 860617..861096 (+) 480 WP_002267187.1 8-oxo-dGTP diphosphatase Machinery gene
  RDV58_RS04485 (RDV58_04485) - 861166..862335 (+) 1170 WP_002267188.1 AI-2E family transporter -
  RDV58_RS04490 (RDV58_04490) - 862325..863557 (+) 1233 WP_002264616.1 tetratricopeptide repeat protein -
  RDV58_RS04495 (RDV58_04495) alsS 863690..865369 (+) 1680 WP_002264615.1 acetolactate synthase AlsS -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 18916.58 Da        Isoelectric Point: 5.6576

>NTDB_id=799574 RDV58_RS04480 WP_002267187.1 860617..861096(+) (mutX) [Streptococcus mutans strain LMG 14558]
MTKLATICYIDNGRELLLMHRNKKPNDVHEGKWISVGGKLEKGESPDECARREIFEETHLIVKQMDFKGIITFPDFTPGH
DWYTYVFKVRDFEGRLISDKDSREGTLEWVPYNQVLTKPTWEGDYEIFKWILEDAPFFSAKFVYQEQKLVDKHVIFYEK

Nucleotide


Download         Length: 480 bp        

>NTDB_id=799574 RDV58_RS04480 WP_002267187.1 860617..861096(+) (mutX) [Streptococcus mutans strain LMG 14558]
ATGACAAAATTAGCAACAATTTGTTATATTGATAATGGGCGCGAGCTTTTATTGATGCATCGTAATAAAAAACCGAATGA
TGTTCATGAAGGCAAATGGATTAGTGTAGGTGGAAAATTAGAAAAAGGAGAGAGTCCTGATGAATGTGCCAGACGTGAAA
TTTTTGAGGAGACTCATTTAATTGTCAAACAAATGGATTTTAAAGGCATTATTACTTTTCCAGATTTCACACCGGGTCAC
GATTGGTATACTTATGTGTTTAAGGTAAGAGATTTTGAAGGTCGGTTGATTTCTGATAAAGACAGTCGTGAAGGAACGTT
GGAATGGGTACCTTATAATCAGGTTTTAACTAAGCCAACATGGGAAGGCGACTATGAAATTTTTAAATGGATCTTAGAAG
ATGCCCCCTTTTTCTCTGCCAAATTTGTTTATCAAGAGCAAAAGCTAGTTGATAAACATGTGATTTTTTATGAAAAATAG

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(4-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

69.62

99.371

0.692