Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   RDV58_RS04405 Genome accession   NZ_CP133475
Coordinates   847468..849672 (+) Length   734 a.a.
NCBI ID   WP_002279905.1    Uniprot ID   -
Organism   Streptococcus mutans strain LMG 14558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 842468..854672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV58_RS04375 (RDV58_04375) - 842560..842736 (-) 177 WP_002279903.1 DUF3042 family protein -
  RDV58_RS04380 (RDV58_04380) miaA 842811..843695 (+) 885 WP_002279904.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  RDV58_RS04385 (RDV58_04385) hflX 843884..845131 (+) 1248 WP_002267752.1 GTPase HflX -
  RDV58_RS04390 (RDV58_04390) - 845118..845753 (+) 636 WP_002267751.1 hypothetical protein -
  RDV58_RS04395 (RDV58_04395) rnz 845781..846710 (+) 930 WP_002267176.1 ribonuclease Z -
  RDV58_RS04400 (RDV58_04400) - 846707..847471 (+) 765 WP_002266218.1 SDR family oxidoreductase -
  RDV58_RS04405 (RDV58_04405) recJ 847468..849672 (+) 2205 WP_002279905.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  RDV58_RS04410 (RDV58_04410) - 849792..850691 (+) 900 WP_002268916.1 YafY family protein -
  RDV58_RS04415 (RDV58_04415) - 850943..851575 (+) 633 WP_002263076.1 GyrI-like domain-containing protein -
  RDV58_RS04420 (RDV58_04420) - 851728..851787 (+) 60 Protein_821 hypothetical protein -
  RDV58_RS04425 (RDV58_04425) - 851862..852116 (+) 255 Protein_822 ClbS/DfsB family four-helix bundle protein -
  RDV58_RS04430 (RDV58_04430) - 852248..852766 (+) 519 WP_002263078.1 adenine phosphoribosyltransferase -
  RDV58_RS04435 (RDV58_04435) metA 852870..853814 (+) 945 WP_002267181.1 homoserine O-succinyltransferase -
  RDV58_RS04440 (RDV58_04440) - 853824..854519 (+) 696 WP_002267182.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 734 a.a.        Molecular weight: 82440.23 Da        Isoelectric Point: 4.4751

>NTDB_id=799573 RDV58_RS04405 WP_002279905.1 847468..849672(+) (recJ) [Streptococcus mutans strain LMG 14558]
MITSKYAWKINEKKPDDGFFELAKKENLNPTAAQILYERGFKTSEDIEAFLRPDLSQLHDPFLLNDMDKAVTRIRRAIET
NERILIYGDYDADGMTSSSIAKEALEMLGAEVEAYLPNRFTDGYGPNLSVYKYFIEQQDISLILTVDNGIAGHDAIAYAQ
GQGVDVIVTDHHSMPAELPSAYAVVHPEHPDANYPFKCLAGCGVAFKLACALLESIPTEMLDLVAIGTIADMVSLTDENR
VMVKYGLEILKQTERVGLQELIALAGVDFADINEETIGFKLAPQLNALGRLDDPNPAVELLTGFDDEEAKTIAAMINEKN
EERKTIVQAIFEEAMTLVDENKSVQVLAKEGWHAGVLGIVAGRIMEQINQPVIVLNIENGLAKGSARSLESVNIFNALDA
HRDLFMAFGGHAGAAGMTLEADKLEELSQVLNDYIQEHAIDLSQKSVLVIDEELYLPELSLDTLKGLETLAPFGMDNKKP
IFLLRDFTVKQVRTMGQNGAHLKLKVAQEQAVFDLLAFNYGSLVTEFQQAQHLELAVTLSVNRWNGNTSLQLMLVDARVE
GIQLLDIRARNSALPDGVPFLEDQTDSKAVVLFEIPEKEEDLLALFENRDFEVIYFKNRIKHQYYLTGSGTREQFAKLYK
TIYQFPEFDVRHKLKELSQFLKIPDILLVKMIQIFDELDFVSIDDGIMTVNKDAQKREISDSHIYQDLKKLVKFQELMAL
GTPQEIYEFLKRDR

Nucleotide


Download         Length: 2205 bp        

>NTDB_id=799573 RDV58_RS04405 WP_002279905.1 847468..849672(+) (recJ) [Streptococcus mutans strain LMG 14558]
ATGATTACTTCCAAATATGCTTGGAAAATAAATGAAAAAAAGCCAGATGATGGCTTTTTTGAGCTGGCTAAAAAAGAAAA
TCTCAATCCTACAGCTGCACAAATTTTATATGAGCGAGGTTTTAAAACAAGTGAAGATATAGAAGCGTTTTTGAGACCTG
ATTTGTCTCAATTACATGATCCTTTTCTTTTAAATGATATGGACAAGGCTGTCACGCGTATTCGCAGAGCTATTGAAACC
AATGAACGAATTCTTATCTATGGGGATTACGATGCTGATGGTATGACGTCAAGTTCCATTGCAAAGGAAGCTTTGGAAAT
GCTGGGAGCTGAGGTAGAGGCTTATCTTCCTAATCGTTTTACCGATGGTTATGGTCCCAATCTCAGTGTTTATAAATATT
TTATTGAGCAGCAGGATATATCACTGATTCTTACTGTGGATAATGGTATTGCTGGCCATGATGCTATTGCTTATGCGCAA
GGACAAGGTGTTGATGTCATTGTTACTGACCACCACAGTATGCCTGCTGAGCTTCCTTCAGCTTATGCTGTTGTTCATCC
TGAACATCCGGATGCTAATTATCCTTTTAAATGTTTAGCAGGGTGCGGTGTCGCTTTTAAGCTAGCCTGTGCCTTGTTAG
AATCCATTCCGACAGAGATGCTGGATTTGGTGGCTATTGGAACCATTGCCGATATGGTATCGCTCACCGATGAAAATCGT
GTAATGGTCAAATACGGTCTTGAAATCCTAAAACAAACAGAGCGCGTCGGTCTGCAAGAATTAATAGCACTTGCAGGTGT
TGATTTTGCTGATATCAATGAAGAAACTATTGGTTTCAAGTTAGCACCCCAGCTTAATGCTTTGGGACGTCTGGATGATC
CCAATCCTGCTGTTGAATTGTTGACAGGCTTTGATGATGAAGAAGCAAAGACTATTGCGGCCATGATTAATGAAAAAAAT
GAGGAGCGAAAGACCATTGTACAGGCTATTTTTGAAGAAGCTATGACTCTGGTTGATGAGAACAAATCTGTTCAGGTCTT
GGCTAAAGAAGGCTGGCATGCTGGTGTTCTGGGGATTGTTGCAGGTCGTATTATGGAACAAATAAACCAGCCAGTCATTG
TTCTTAATATTGAAAATGGCCTTGCCAAGGGAAGTGCCCGTAGTTTAGAGTCAGTCAATATTTTTAATGCCCTTGATGCG
CATAGGGATTTATTTATGGCTTTTGGAGGCCATGCTGGAGCTGCGGGTATGACTCTAGAGGCTGATAAATTAGAAGAATT
ATCACAGGTTTTAAATGATTATATTCAAGAACATGCGATTGATTTATCGCAAAAGTCTGTTTTAGTAATTGATGAAGAAT
TGTACTTGCCAGAACTTAGTTTAGATACTTTAAAAGGGCTTGAAACTTTGGCTCCTTTTGGTATGGACAATAAAAAACCT
ATTTTTTTACTAAGGGATTTTACAGTCAAACAGGTTAGAACGATGGGACAAAATGGAGCTCATTTGAAGTTAAAAGTGGC
TCAGGAACAGGCTGTCTTTGATCTCCTTGCCTTTAACTACGGTTCGCTCGTGACAGAATTTCAACAAGCTCAGCATCTCG
AACTAGCTGTTACTTTATCGGTTAATCGTTGGAACGGCAATACTAGTCTACAATTGATGCTAGTTGATGCGCGTGTTGAA
GGCATTCAGTTGCTTGATATCCGTGCTCGCAATAGCGCTCTGCCTGACGGAGTTCCCTTTTTAGAAGATCAAACAGATAG
TAAGGCAGTTGTCTTATTTGAAATACCGGAAAAAGAAGAAGACCTTCTAGCACTTTTTGAAAATCGGGATTTTGAAGTCA
TTTATTTTAAAAATAGGATTAAGCATCAATATTATTTAACAGGATCTGGAACGCGTGAGCAATTTGCTAAGCTTTACAAG
ACGATTTACCAGTTTCCGGAATTTGATGTACGTCATAAGTTAAAAGAGCTCAGTCAATTTCTCAAAATTCCAGATATTTT
GCTGGTCAAGATGATCCAAATTTTTGATGAATTGGACTTTGTTTCCATTGATGATGGCATTATGACAGTTAATAAAGATG
CTCAAAAACGGGAAATTTCTGACAGTCATATTTATCAAGATTTGAAAAAATTAGTGAAATTCCAAGAGTTAATGGCATTA
GGAACACCTCAAGAAATATATGAATTTTTAAAACGCGATCGCTAA

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-435)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(584-729)

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

65.082

100

0.653
  recJ Bacillus subtilis subsp. subtilis str. 168

37.726

100

0.398