Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   RDV54_RS08770 Genome accession   NZ_CP133471
Coordinates   1826399..1827130 (+) Length   243 a.a.
NCBI ID   WP_000889948.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821399..1832130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS08745 (RDV54_08745) - 1822895..1823296 (+) 402 WP_000114425.1 hypothetical protein -
  RDV54_RS08750 (RDV54_08750) - 1823376..1824008 (+) 633 WP_000756346.1 DJ-1/PfpI family protein -
  RDV54_RS08755 (RDV54_08755) dnaJ 1824207..1825343 (+) 1137 WP_001066310.1 molecular chaperone DnaJ -
  RDV54_RS08760 (RDV54_08760) - 1825624..1825911 (-) 288 WP_000777752.1 hypothetical protein -
  RDV54_RS08765 (RDV54_08765) - 1825921..1826331 (-) 411 WP_001278319.1 HIT family protein -
  RDV54_RS08770 (RDV54_08770) pptA 1826399..1827130 (+) 732 WP_000889948.1 ABC transporter ATP-binding protein Regulator
  RDV54_RS08775 (RDV54_08775) pptB 1827127..1828176 (+) 1050 WP_000653760.1 ABC transporter permease Regulator
  RDV54_RS08780 (RDV54_08780) - 1828238..1828567 (-) 330 WP_000132585.1 hypothetical protein -
  RDV54_RS08785 (RDV54_08785) comE/blpR 1828863..1829609 (+) 747 WP_001219140.1 response regulator transcription factor Regulator
  RDV54_RS08790 (RDV54_08790) - 1829614..1830963 (+) 1350 WP_000409121.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27161.65 Da        Isoelectric Point: 5.0011

>NTDB_id=799514 RDV54_RS08770 WP_000889948.1 1826399..1827130(+) (pptA) [Streptococcus mitis strain LMG 14557]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATNYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLKVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAHGNLQQLREAFNMPEASLNDIYLALTKE
EEL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=799514 RDV54_RS08770 WP_000889948.1 1826399..1827130(+) (pptA) [Streptococcus mitis strain LMG 14557]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTCCATGTCCCTGTCTTGAAAGATGTGTCCTTTACAGTTGAAAGTGG
GCAGTTAGTCGGTTTGATCGGTCTCAATGGTGCTGGGAAATCGACGACCATCAATGAAATTATCGGTCTGTTGACACCTT
ATAGCGGATCTATCAATATCAATGGCTTGACCCTGCAAGAAGATGCGACCAACTACCGCAAACAGATTGGTTACATTCCT
GAGACACCCAGTCTGTATGAGGAATTAACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTATGGTATCGAGCAAAA
AGTGGCTTTTGAACGAGTAGAACCCTTGTTAAAAATGTTTCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTTATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTCTTTATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCGATTGCGGACTTGATTCAGCTTTTGAAAGTGGAAAAGCAAAAGGGCAAGTCCATTCTCAT
GAGTACCCACGTTCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTCCACAAGGGGGAGGTGCGTGCTCATG
GGAACCTCCAGCAACTCCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGAGTTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708