Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   P2C01_RS13600 Genome accession   NZ_CP119521
Coordinates   2913910..2915634 (-) Length   574 a.a.
NCBI ID   WP_275723097.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2908910..2920634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS13580 - 2909600..2910430 (-) 831 WP_004728572.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  P2C01_RS13585 - 2910525..2912045 (-) 1521 WP_275723094.1 SPOR domain-containing protein -
  P2C01_RS13590 aroB 2912091..2913176 (-) 1086 WP_004728570.1 3-dehydroquinate synthase -
  P2C01_RS13595 aroK 2913204..2913722 (-) 519 WP_004728569.1 shikimate kinase AroK -
  P2C01_RS13600 pilQ 2913910..2915634 (-) 1725 WP_275723097.1 type IV pilus secretin PilQ Machinery gene
  P2C01_RS13605 pilP 2915659..2916171 (-) 513 WP_275723099.1 pilus assembly protein PilP Machinery gene
  P2C01_RS13610 pilO 2916161..2916751 (-) 591 WP_004728566.1 type 4a pilus biogenesis protein PilO Machinery gene
  P2C01_RS13615 pilN 2916744..2917334 (-) 591 WP_158165891.1 PilN domain-containing protein Machinery gene
  P2C01_RS13620 pilM 2917324..2918328 (-) 1005 WP_275723101.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 574 a.a.        Molecular weight: 61958.62 Da        Isoelectric Point: 4.4080

>NTDB_id=799463 P2C01_RS13600 WP_275723097.1 2913910..2915634(-) (pilQ) [Vibrio furnissii strain C1]
MIKGLNASTAWGIRCLFVGVCLLLSAATFAQEAAANQLKNIDFRINKDKAAVLIVELASASAVVDVQKTEQGLTIELLKT
DVSDDKLYLVDVRDFATAVENIEVFRQQPSTVLVATVQGAFNYEYSLKGNYLEVVISKVSAQEPQPKSVLEKEGKLISIN
FQDIPVRNVLQLIADYNQFNLVVSDSVSGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDRREQQQLEK
ARMAEELGDLQSEIIKINFAKASDIAQMIGGDGAVNMLSERGSISIDERTNALLLRELPDNIDVIRDIVASLDIPVKQVQ
IEARIVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVNLAATSANASSIAFQVA
KMGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGATSVAFKKAVLSLKVTPQITPDNRLV
LDLSVTQDRPGEVVKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGK
SELLIFVTPKVVIQ

Nucleotide


Download         Length: 1725 bp        

>NTDB_id=799463 P2C01_RS13600 WP_275723097.1 2913910..2915634(-) (pilQ) [Vibrio furnissii strain C1]
ATGATTAAAGGACTAAATGCCTCCACGGCTTGGGGAATACGTTGTCTGTTCGTGGGCGTATGCCTGCTGTTATCTGCCGC
CACATTTGCCCAGGAAGCGGCGGCCAATCAGCTGAAAAATATTGACTTTCGCATCAATAAAGACAAAGCGGCGGTGTTGA
TTGTCGAACTGGCGTCGGCTTCTGCGGTGGTGGATGTGCAGAAAACGGAGCAAGGATTGACGATCGAATTGCTTAAAACC
GATGTTAGCGATGACAAACTGTATTTGGTGGACGTGCGCGATTTTGCCACGGCGGTGGAAAACATCGAAGTGTTTCGCCA
GCAACCGAGCACGGTGCTGGTGGCGACGGTGCAAGGGGCATTCAATTACGAATACAGCCTGAAAGGCAATTACTTGGAGG
TGGTGATCAGCAAAGTCAGTGCGCAAGAACCGCAACCGAAAAGTGTCTTAGAGAAAGAAGGTAAGCTGATTTCGATTAAC
TTCCAAGACATTCCCGTGCGCAACGTGCTGCAGCTCATCGCCGACTACAACCAGTTCAACTTGGTGGTCTCCGATTCCGT
CAGCGGTAACTTAACATTGCGCCTCGATGGCGTGCCGTGGCAACAAGTGCTGGATATCATTTTACAAGTCAAAGGGCTGG
ACAAACGGGTCGATGGCAACGTCATTCTGGTGGCACCCAAAGAGGAGCTGGACCGACGCGAGCAGCAGCAATTGGAAAAA
GCGCGCATGGCGGAAGAGCTGGGCGATCTGCAATCGGAAATCATCAAAATCAATTTCGCCAAGGCATCTGACATTGCACA
GATGATCGGTGGGGATGGCGCGGTGAACATGTTGTCAGAGCGCGGCTCCATCAGTATTGATGAGCGCACCAACGCCTTGC
TACTGCGCGAGCTGCCTGACAACATCGACGTGATCCGCGACATCGTGGCTTCACTCGACATTCCGGTCAAACAAGTGCAA
ATCGAAGCGCGCATCGTCACGGTGAATGAGGGCGATTTGGATGAGCTTGGCGTGCGCTGGGGCTTTAGTTCCACCAACGG
GAGCACCACCACTGGTGGCTCGATTGAAAGTAATCTCGGTGCCATTGGGTTGTATGACGGCAGCAGTGATTCGGGCGATG
GCGCCGCGATTGATGATTTCCTCAATGTGAACCTTGCTGCTACCTCCGCCAATGCATCCAGTATTGCGTTTCAGGTGGCC
AAGATGGGCGCTGACACCTTGCTTGATCTTGAATTGTCGGCGATGCAGCGCGAGTCGAAAGCGGAAATTATTTCCAGCCC
AAGGCTGATCACCACCAACAAACAACCGGCTTACATTGAACAGGGGACGGAAATTCCTTATCTCGAATCGTCCTCCAGTG
GCGCAACCAGCGTGGCATTTAAAAAAGCGGTCCTCAGCCTCAAAGTGACCCCGCAAATCACGCCTGACAACCGTTTGGTG
CTCGATTTGAGCGTGACCCAAGACCGACCGGGTGAAGTGGTGAAAACGGGCACGGGCGAAGCGGTGGCGATTAACACGCA
GCGTATTGGGACCCAAGTGTTAGTTAATAACGGTGAAACCGTGGTGCTGGGCGGCATTTTTCAACACAGCGTGACCAGTT
CTGTGGACAAAGTGCCCTTGCTTGGGGACTTGCCATTACTGGGCGCGCTGTTCCGTCGCAGCTACGAACAGATGGGGAAA
AGTGAGCTACTGATCTTCGTCACGCCGAAAGTTGTGATTCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(179-227)

Bacterial type II and III secretion system protein (Secretin)

(414-572)

Bacterial type II/III secretion system short domain (Secretin_N)

(253-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

80.556

100

0.808
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

80.556

100

0.808
  pilQ Vibrio campbellii strain DS40M4

77.231

95.645

0.739
  pilQ Pseudomonas aeruginosa PAK

40.035

99.652

0.399
  comQ Acinetobacter baylyi ADP1

38.737

100

0.395
  pilQ Legionella pneumophila strain ERS1305867

41.392

95.122

0.394
  pilQ Legionella pneumophila strain Lp02

41.392

95.122

0.394
  pilQ Acinetobacter baumannii D1279779

37.457

100

0.38
  pilQ Acinetobacter baumannii strain A118

37.457

100

0.38