Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   RDV54_RS05385 Genome accession   NZ_CP133471
Coordinates   1133197..1135563 (+) Length   788 a.a.
NCBI ID   WP_000454517.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1128197..1140563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS05365 (RDV54_05365) - 1130529..1131077 (-) 549 WP_000622765.1 CvpA family protein -
  RDV54_RS05370 (RDV54_05370) zapA 1131074..1131376 (-) 303 WP_000002019.1 cell division protein ZapA -
  RDV54_RS05375 (RDV54_05375) rnhC 1131463..1132344 (+) 882 WP_000146882.1 ribonuclease HIII -
  RDV54_RS05380 (RDV54_05380) lepB 1132348..1132962 (+) 615 WP_004239180.1 signal peptidase I -
  RDV54_RS05385 (RDV54_05385) recD/recD2/recDB 1133197..1135563 (+) 2367 WP_000454517.1 ATP-dependent RecD-like DNA helicase Machinery gene
  RDV54_RS05390 (RDV54_05390) tig 1135716..1136999 (-) 1284 WP_000116485.1 trigger factor -
  RDV54_RS05395 (RDV54_05395) - 1137083..1137748 (-) 666 WP_000050044.1 DNA alkylation repair protein -
  RDV54_RS05400 (RDV54_05400) vraR 1137749..1138381 (-) 633 WP_000698442.1 response regulator transcription factor Regulator
  RDV54_RS05405 (RDV54_05405) - 1138395..1139390 (-) 996 WP_000743694.1 sensor histidine kinase -
  RDV54_RS05410 (RDV54_05410) liaF 1139387..1140085 (-) 699 WP_001224652.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88292.27 Da        Isoelectric Point: 4.6379

>NTDB_id=799455 RDV54_RS05385 WP_000454517.1 1133197..1135563(+) (recD/recD2/recDB) [Streptococcus mitis strain LMG 14557]
MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGGNTIDEILQHPEKLEGIAGLSAKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEKTLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQTCMETGDTYVEA
RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKIQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSQDLKTIQKH
ITTVEEDLGIKYDIIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSGIPARDIQV
LAPMYRGTAGIDAINQLMQDLLNPPQKNQLSFEAPQCHYRKGDKVIHLVNDAEINVFNGDLGAITDLIPGKYTESKQDEI
VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDYATQ
HIGTARKTYLIERFSDLLENVEEKQPAVSETATSSTSEQSYILTEENWDSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=799455 RDV54_RS05385 WP_000454517.1 1133197..1135563(+) (recD/recD2/recDB) [Streptococcus mitis strain LMG 14557]
ATGGAAGTTTATTTTTCAGGAACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTTCTCCTAGA
AATCGACGATACAGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACGGGCACCATGGCTGATGTGATTGAGGGAG
AAGACTATACTTTTTGGGGACAAATTGTCCAGCACTCCAAGTATGGGGAGCAACTGCAAATCAGTCGTTATGAACGCGCA
AAACCAACTAGCAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGAATTGGTCTCAAAACAGCTCAAAAAAT
TGTAGATACCTATGGCGGCAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATTGCAGGACTCTCTG
CCAAAAATCGCGAGGCCTTCGTCTCAACTCTTCGTCTCAACTACGGAACCGAGATGGTCTTGGCCAAACTAGCCAACTAC
GGCATTCCCAATAAATTAGCCTTTCAGATTCAAGACTTTTACAAGGAAAAAACCCTTGACGTGGTTGAAAATTATCCCTA
CCAACTAGTTGAAGATATCAAGGGTTTGGGCTTTACTATTGCTGACCAATTAGCAGAAGAACTAGGCATCGAAAGTCAGG
CTCCTGAACGCTTTCGTGCCGGTCTAGTTCACAGTCTTTTTCAGACCTGTATGGAAACAGGGGACACCTATGTTGAAGCA
CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCTCGTCCCGTGGAACTGGATCCCAGCCAAGTGGCCCAAGA
GCTCTCCTACCTGATTGAAGAAGACAAGATTCAGCAGATTGATACCAAAATTTTTGACAACAGCCTCTTTTTCGCTGAGG
AAGGCATCCGCAGTCACTTGGTCCGTATCCTTGAAAAAGGAAAACAGAAGAGCCAGGATTTAAAAACCATTCAAAAACAT
ATCACTACTGTCGAAGAAGATCTGGGGATTAAGTATGATATCATTCAAAAACAGGCTATCTGCGACGCTATCCAGAACAA
GGTCTTTATCCTGACAGGTGGGCCCGGTACGGGTAAGACGACTGTTATCAATGGAATCATCGCTGTTTATGCCCTTTTAG
AAGGACTTGACCTCAGGAAAAAAAGCAACCTGCCGATTCTTCTTGCTGCTCCAACTGGACGAGCAGCTCGCCGCATGAAT
GAATTGACAGGTTTGCCTAGCGCGACCATACACCGACATTTAGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA
TTATCTGGATGCTGACTTTATCATCGTGGATGAATTTTCCATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAACA
TCTCTTCTAACAGTAAAATCCTCATCGTGGGCGACAGCGACCAGTTGCCTTCTGTCAGTCCTGGACAAGTTCTAGCTGAT
CTGCTTCATATTCCCTTGATTCCTCAGACTCGCTTGGAAAAAATTTACAGGCAAAGCGAAGAATCAACCATCGTCACCCT
AGCTAGTCAAATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAGAAAAAAGCAGACCGTTCCTACTTTGAAATTGCTA
GTGGCCATATTCCAGCTACGATTGAAAAAATCTTAGGTGCTGCCCTCAGAAGTGGTATTCCTGCCCGTGATATCCAAGTT
CTGGCTCCCATGTACCGAGGGACGGCAGGAATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCACCACAAAA
AAATCAGCTCAGTTTTGAAGCTCCCCAGTGCCACTATCGTAAGGGCGACAAGGTCATTCATTTGGTCAACGATGCTGAAA
TCAATGTCTTTAATGGGGATTTGGGAGCTATCACAGACCTGATTCCCGGCAAATATACTGAGTCGAAACAAGATGAGATT
GTCATTGATTTTGACGGCAACGAAGTCTCTTACCCACGTAACGAATGGTACAAGATTCGCTTGGCATATGCCATGAGTAT
CCATAAATCGCAGGGAAGTGAGTTCCCTGTTGTTATCCTACCTATCACCAGTGCTAGCAGGCGTATGCTGGAGCGCAATC
TCATCTACACAGCCATTACACGCGCCAAAAGCAAGCTTATCTTACTAGGCGAATTACAGGCCTTTGATTATGCTACCCAA
CATATCGGAACTGCCCGAAAAACCTATCTGATTGAACGCTTCAGTGATTTATTGGAAAATGTTGAAGAAAAGCAACCAGC
TGTCTCTGAAACTGCCACATCAAGTACCTCTGAACAATCCTACATCCTGACAGAAGAAAACTGGGACAGTATACCAGCCA
TGATTGGGATTACAGACGCAGACCTCAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

AAA domain (AAA_30)

(336-520)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

41.589

95.812

0.398