Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   P2C01_RS06355 Genome accession   NZ_CP119521
Coordinates   1361583..1363004 (-) Length   473 a.a.
NCBI ID   WP_232658670.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1356583..1368004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS06340 cdd 1359401..1360288 (-) 888 WP_004726199.1 cytidine deaminase -
  P2C01_RS06345 - 1360497..1361177 (-) 681 WP_014205225.1 LrgB family protein -
  P2C01_RS06350 - 1361168..1361542 (-) 375 WP_004726196.1 CidA/LrgA family protein -
  P2C01_RS06355 sbcB 1361583..1363004 (-) 1422 WP_232658670.1 exodeoxyribonuclease I Machinery gene
  P2C01_RS06360 - 1363375..1364256 (+) 882 WP_275724273.1 hypothetical protein -
  P2C01_RS06365 - 1364331..1365266 (-) 936 WP_275724274.1 sce7725 family protein -
  P2C01_RS06370 - 1365232..1366122 (-) 891 WP_242011016.1 sce7726 family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54358.74 Da        Isoelectric Point: 4.8928

>NTDB_id=799455 P2C01_RS06355 WP_232658670.1 1361583..1363004(-) (sbcB) [Vibrio furnissii strain C1]
MQQQQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMEFNIIGEPLVIYCQLPSDYLPAPEAALITGIIPQKAMAQGLPEPE
FIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGVVWPENDEGFTS
FKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFEYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQYT
SWIVPIAWHPTNQNAVIVVDLAKDPQPLLDLDVESLHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAAT
IGIDRELCLANLARIRQSPDIREKLAALFSIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTNPELLGELDITFSDKR
IEPLLFRYRARNFPWTLDDEEQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=799455 P2C01_RS06355 WP_232658670.1 1361583..1363004(-) (sbcB) [Vibrio furnissii strain C1]
ATGCAGCAACAGCAGCCCACTTATTTTTTCTTTGACTATGAGACGTGGGGCACCAGCCCGGCCAAAGACCGTCCGAGTCA
GTTTGCTGGTGTGCGCACAGACATGGAGTTCAATATCATCGGTGAGCCGTTGGTGATTTACTGCCAATTGCCATCGGATT
ACCTGCCGGCACCTGAAGCCGCGCTGATTACTGGCATCATTCCGCAAAAAGCGATGGCGCAAGGGCTGCCTGAACCCGAA
TTCATCGCCAAGATTCACGCCGAGTTATCGACACCAAACACCACAAGCCTTGGGTACAACAGCATTCGTTTCGACGATGA
AGTCACCCGCTATACCTGTTATCGCAACTTCCTTGACCCGTATGCTTGGAGCTGGCAAAACGGCAACTCCCGTTGGGATT
TACTGGATGTGATGCGTGCATGCCACGCATTGCGCCCGGAAGGTGTGGTATGGCCAGAAAACGACGAAGGGTTTACCAGC
TTTAAGCTGGAACATTTGTCAAAAGCCAACGGCATTGAGCACGAAAATGCGCACGATGCGATGGCGGATGTGATTGCGAC
GATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAACCCAAGCTGTTTGAGTATTTCTTCTCGATGCGTCATAAACGCAAGC
TCAATGAGCTGATTGATATTGTCAACATGACGCCGCTGATGCATGTCTCTGGCATGCTGGGCCGTGAATGCCAATACACC
AGTTGGATTGTACCGATTGCTTGGCACCCGACCAACCAAAACGCGGTCATTGTGGTGGATTTAGCCAAAGATCCACAGCC
GCTGCTCGATTTGGATGTGGAATCACTGCACGCGCGTTTATACACTCGTCATGACGATTTAGCGCCGGATGAATTGCCTG
TGCCCGTCAAGCTGGTTCATCTCAACAAGTGTCCGATTCTAGCCCCGGCGAAAACGCTCACCGCCGAAAATGCCGCCACC
ATCGGCATCGACCGCGAACTGTGCTTGGCCAACTTGGCACGCATTCGTCAGTCTCCCGATATTCGCGAAAAACTGGCGGC
GCTGTTTAGCATTGAGCGCGAATTTGAAGCCTCGAACGATGTGGATACGCAGCTCTATGACGGGTTCTTCTCCCCTGCAG
ATAAAGCTGCGATGGAAATTATTCGTTCCACGAATCCTGAACTGCTCGGCGAGTTGGATATCACGTTCAGCGACAAACGC
ATTGAACCCCTGCTGTTTCGTTACCGCGCGCGCAACTTCCCGTGGACACTCGACGACGAAGAGCAACGCCGCTGGGCGAA
CCATTGTCGCGATTACTACGAAACGCATCTGCCCGATTACATGCTGAACCTGGAAAATCTGGTGCATGAACATGAAAGTG
ATGAAAAGAAAATCGCGATTCTCAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(209-469)

Exonuclease (RNase_T)

(10-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.439

99.577

0.831