Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxO   Type   Regulator
Locus tag   P2C01_RS04375 Genome accession   NZ_CP119521
Coordinates   934499..935878 (+) Length   459 a.a.
NCBI ID   WP_275724395.1    Uniprot ID   -
Organism   Vibrio furnissii strain C1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context


Location: 929499..940878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P2C01_RS04360 - 931219..931386 (+) 168 WP_275724022.1 hypothetical protein -
  P2C01_RS04370 uvrB 932182..934212 (+) 2031 WP_275724023.1 excinuclease ABC subunit UvrB -
  P2C01_RS04375 luxO 934499..935878 (+) 1380 WP_275724395.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  P2C01_RS04380 luxU 935885..936223 (+) 339 WP_275724025.1 quorum-sensing phosphorelay protein LuxU -
  P2C01_RS04385 - 936212..937102 (-) 891 WP_275724026.1 YvcK family protein -
  P2C01_RS04390 moaA 937412..938401 (+) 990 WP_014205522.1 GTP 3',8-cyclase MoaA -
  P2C01_RS04395 moaB 938472..938984 (+) 513 WP_004726639.1 molybdenum cofactor biosynthesis protein B -
  P2C01_RS04400 moaC 938994..939473 (+) 480 WP_004726638.1 cyclic pyranopterin monophosphate synthase MoaC -
  P2C01_RS04405 moaD 939470..939715 (+) 246 WP_004726637.1 molybdopterin synthase sulfur carrier subunit -
  P2C01_RS04410 moaE 939717..940172 (+) 456 WP_055466266.1 molybdopterin synthase catalytic subunit MoaE -

Sequence


Protein


Download         Length: 459 a.a.        Molecular weight: 51036.38 Da        Isoelectric Point: 5.5496

>NTDB_id=799447 P2C01_RS04375 WP_275724395.1 934499..935878(+) (luxO) [Vibrio furnissii strain C1]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKANKLKNETDNPGNQNYQGFIGSSQTMLAVYRTIDSAATSK
ASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDEL
CEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEI
AYSLLGYMSKEEGKGFVRLAPDVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREIALTMLPPPLNQLSYSRINVPKASPA
PVSVHEIFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=799447 P2C01_RS04375 WP_275724395.1 934499..935878(+) (luxO) [Vibrio furnissii strain C1]
ATGGTCGAAGATACGGCGTCGGTTGCGGCGTTGTATCGTTCGTACCTGACACCGCTCGAGATCGATATCAACATTGTCGG
AACGGGACGTGAAGCGATCGAGAGCATCGCCCATCGCGAGCCGGATCTGATCCTCCTCGATCTGCGCCTGCCGGACATGA
CGGGTATGGATGTCTTGCACGCGGTGAAACAGCGTTCACCGGATGTGCCGGTGATTTTTATGACGGCTCATGGCTCCATT
GATACCGCCGTCGAAATTGATACCGCCGTCGAAGCCATGCGTCACGGTGCGCAAGATTTCCTCATCAAACCGTGCGAAGC
CGACCGTTTGCGTGTGACGGTCAACAACGCCATTCGCAAGGCAAACAAACTCAAAAACGAAACCGACAATCCAGGTAATC
AGAATTACCAAGGGTTCATTGGCAGCAGCCAGACTATGTTGGCGGTGTATCGCACCATCGACTCTGCGGCCACCAGTAAA
GCGAGTATTTTCATTACCGGCGAAAGTGGTACCGGTAAAGAGGTGTGCGCCGAAGCCATCCATGCGGCCAGCAAGCGCGG
CGACAAGCCGTTCATTGCCATTAACTGTGCGGCCATTCCCAAAGATCTGATTGAAAGTGAACTGTTCGGTCACGTCAAAG
GTGCGTTTACTGGCGCGGCGACGGATCGTCAGGGCGCGGCAGAACTGGCCGATGGCGGCACCTTGTTCTTGGACGAGCTG
TGTGAAATGGATTTGGATCTGCAAACCAAGCTGCTGCGCTTTATTCAGACCGGGACCTTCCAGAAAGTCGGATCGTCTAA
AATGAAGAGTGTGGACGTGCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTG
AAGACTTGTATTACCGTCTGTACGTGATTCCGTTGCATCTGCCCCCTTTGCGTGAGCGCGGCGATGATGTGATTGAAATC
GCGTATTCACTACTGGGGTACATGTCGAAAGAAGAAGGCAAAGGCTTTGTGCGTTTGGCGCCAGATGTCGTAGAGCGCTT
CAAACAGTACGAATGGCCGGGGAACGTGCGCCAGCTGCAGAACGTGCTGCGCAACGTGGTGGTGCTTAATGAAGGGCGTG
AAATTGCGCTGACAATGCTGCCGCCACCGCTGAACCAATTGAGTTACTCACGCATCAATGTCCCGAAAGCCAGCCCAGCG
CCGGTGTCGGTGCATGAAATTTTCCCGTTATGGATGACAGAAAAGCAGGCGATCGAAAAAGCAATCGAGGCCTGTGATGG
CAATATTCCGCGTGCTGCGGGCTATTTGGATGTCAGTCCATCCACCATCTACCGCAAGCTGCAAACCTGGAATGAAAAGG
TGCAGGAAAAGGAAAAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.625

98.693

0.885