Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR1   Type   Regulator
Locus tag   RDV54_RS04285 Genome accession   NZ_CP133471
Coordinates   862223..862405 (-) Length   60 a.a.
NCBI ID   WP_002877065.1    Uniprot ID   -
Organism   Streptococcus mitis strain LMG 14557     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 857223..867405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDV54_RS04260 (RDV54_04260) - 857257..857817 (-) 561 WP_000915275.1 ECF transporter S component -
  RDV54_RS04265 (RDV54_04265) thiE 858158..858787 (-) 630 WP_000468570.1 thiamine phosphate synthase -
  RDV54_RS04270 (RDV54_04270) thiM 858777..859571 (-) 795 WP_000202461.1 hydroxyethylthiazole kinase -
  RDV54_RS04275 (RDV54_04275) - 859806..860474 (-) 669 WP_000449832.1 TenA family protein -
  RDV54_RS04280 (RDV54_04280) lctO 860927..862063 (-) 1137 WP_000120723.1 L-lactate oxidase -
  RDV54_RS04285 (RDV54_04285) comR/comR1 862223..862405 (-) 183 WP_002877065.1 hypothetical protein Regulator
  RDV54_RS04290 (RDV54_04290) comR/comR1 862548..862832 (-) 285 WP_158077646.1 hypothetical protein Regulator
  RDV54_RS04295 (RDV54_04295) - 863164..863724 (-) 561 WP_000111604.1 TetR/AcrR family transcriptional regulator -
  RDV54_RS04300 (RDV54_04300) - 863978..864601 (+) 624 WP_000483067.1 cysteine hydrolase -
  RDV54_RS04305 (RDV54_04305) pyrE 864652..865284 (-) 633 WP_000170898.1 orotate phosphoribosyltransferase -
  RDV54_RS04310 (RDV54_04310) pyrF 865318..866019 (-) 702 WP_001206736.1 orotidine-5'-phosphate decarboxylase -

Sequence

Protein


Download         Length: 60 a.a.        Molecular weight: 6987.01 Da        Isoelectric Point: 4.6653

>NTDB_id=799443 RDV54_RS04285 WP_002877065.1 862223..862405(-) (comR/comR1) [Streptococcus mitis strain LMG 14557]
MNEILSVTTLQVYKPGISVFEAKCYLYFENDKNKAKELYHSATILAEQFDDKVLENEKII

Nucleotide


Download         Length: 183 bp        

>NTDB_id=799443 RDV54_RS04285 WP_002877065.1 862223..862405(-) (comR/comR1) [Streptococcus mitis strain LMG 14557]
ATGAATGAAATTTTATCAGTAACAACGTTGCAAGTCTATAAACCTGGAATTTCAGTATTTGAAGCTAAGTGCTATCTTTA
TTTTGAAAATGATAAAAATAAAGCAAAGGAACTTTATCACTCAGCAACTATACTAGCTGAACAATTTGATGATAAAGTAT
TAGAAAATGAAAAGATTATTTGA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(1-56)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

40.741

90

0.367