Detailed information NTG0799442

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: P2C01_RS02340
• Genome accession: NZ_CP119521
• Coordinates: 482175..483164 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain C1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 477175..488164

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P2C01_RS02305	ftsB	477189..477473 (+)	285	WP_004723824.1	cell division protein FtsB	-
P2C01_RS02310	ispD	477470..478183 (+)	714	WP_275723674.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P2C01_RS02315	ispF	478233..478709 (+)	477	WP_004723827.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
P2C01_RS02320	truD	478741..479787 (+)	1047	WP_275723676.1	tRNA pseudouridine(13) synthase TruD	-
P2C01_RS02325	surE	479780..480547 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
P2C01_RS02330	-	480540..481166 (+)	627	WP_158108062.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
P2C01_RS02335	nlpD	481166..482101 (+)	936	WP_275723680.1	murein hydrolase activator NlpD	-
P2C01_RS02340	rpoS	482175..483164 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
P2C01_RS02345	mutS	483233..485794 (-)	2562	WP_004723840.1	DNA mismatch repair protein MutS	-
P2C01_RS02350	pncC	485879..486373 (+)	495	WP_275723683.1	nicotinamide-nucleotide amidase	-
P2C01_RS02355	recA	486540..487592 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
P2C01_RS02360	recX	487687..488157 (+)	471	WP_004723847.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=799442 P2C01_RS02340 WP_004723838.1 482175..483164(+) (rpoS) [Vibrio furnissii strain C1]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=799442 P2C01_RS02340 WP_004723838.1 482175..483164(+) (rpoS) [Vibrio furnissii strain C1]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAGTCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGTGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATTTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGACCTGATTGAAGAGGGCAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGATCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAATTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCACTGCTCGATATCATTCCTGATATCAACAATTCC
GACCCTGAAGTTTCCACGCAGGATGACGACATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCCCGCCGTTTTGGCTTGTTAGGGTATGAACCATCAACGCTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGTTTGCGCCGCCTAAGAGAAATCCTGATGAAACAGGGGTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894