Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P0M04_RS06625 Genome accession   NZ_CP119520
Coordinates   1508100..1509614 (-) Length   504 a.a.
NCBI ID   WP_259448153.1    Uniprot ID   -
Organism   Telluria mixta strain ACM 1762     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1503100..1514614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P0M04_RS06595 (P0M04_06605) hprK 1503370..1504305 (+) 936 WP_036238906.1 HPr(Ser) kinase/phosphatase -
  P0M04_RS06600 (P0M04_06610) rapZ 1504377..1505240 (+) 864 WP_259448149.1 RNase adapter RapZ -
  P0M04_RS06605 (P0M04_06615) - 1505251..1506018 (-) 768 WP_259448150.1 APH(3')-II family aminoglycoside O-phosphotransferase -
  P0M04_RS06610 (P0M04_06620) - 1506015..1506476 (-) 462 WP_259448151.1 SRPBCC family protein -
  P0M04_RS06615 (P0M04_06625) - 1506484..1507560 (-) 1077 WP_259448152.1 enoyl-CoA hydratase/isomerase family protein -
  P0M04_RS06620 (P0M04_06630) hpf 1507663..1508022 (-) 360 WP_036238902.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  P0M04_RS06625 (P0M04_06635) rpoN/rpoN1 1508100..1509614 (-) 1515 WP_259448153.1 RNA polymerase factor sigma-54 Machinery gene
  P0M04_RS06630 (P0M04_06640) lptB 1509617..1510411 (-) 795 WP_371877247.1 LPS export ABC transporter ATP-binding protein -
  P0M04_RS06635 (P0M04_06645) lptA 1510408..1510974 (-) 567 WP_259448154.1 lipopolysaccharide transport periplasmic protein LptA -
  P0M04_RS06640 (P0M04_06650) lptC 1510988..1511611 (-) 624 WP_259448155.1 LPS export ABC transporter periplasmic protein LptC -
  P0M04_RS06645 (P0M04_06655) - 1511620..1512153 (-) 534 WP_259448156.1 HAD family hydrolase -
  P0M04_RS06650 (P0M04_06660) - 1512153..1513175 (-) 1023 WP_371877248.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 55123.52 Da        Isoelectric Point: 4.7871

>NTDB_id=799419 P0M04_RS06625 WP_259448153.1 1508100..1509614(-) (rpoN/rpoN1) [Telluria mixta strain ACM 1762]
MKQTLQLKTSQHLALTPQLQQSIRLLQLSTLELHQEIEQVLSENPLLERLDDPLDRSVRLLADGAINNATIGAPASSQAG
EAPAAQGNGEEGGSAPAESGNGEGGDAGGDSGEGGGEGGEDWGEYGRSGSGGGEEEDGRPQLEASPVTLREHLMEQVRMT
CCAARDCALVELVVDALDDNGYLEEPLEDIHARLPEELEIEFEELRTALALVQSMDPPGVGARSAAECLALQIRRMPGVP
MVTRRMALVIVEKYLTWFAQREFNKLKKALDCDDEDLREAQAVIRQCNPHPGAAFASDVSDFVVPDVIVRRAKDGWSVQL
NPEVMPRLRVNSLYASLMKQGKSETQMNAQLQEAKWLIKNMRQRFDTILRVAQAIVDRQRNFFSHGAVAMRPLVLREIAD
TLGLHESTISRVTTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIAEMLGEQGMV
IARRTVAKYREALKIPPVSLRKSL

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=799419 P0M04_RS06625 WP_259448153.1 1508100..1509614(-) (rpoN/rpoN1) [Telluria mixta strain ACM 1762]
ATGAAACAGACGCTGCAACTCAAGACCTCACAGCACCTTGCACTGACGCCGCAACTGCAGCAGTCGATCCGCCTGCTGCA
GCTGTCCACGCTCGAGCTCCACCAGGAAATCGAGCAGGTCCTGAGCGAGAATCCGCTGCTCGAACGGCTCGACGATCCGC
TCGACCGCTCCGTGCGCCTGCTGGCGGACGGTGCCATAAATAACGCCACCATCGGCGCGCCGGCGTCATCGCAGGCGGGC
GAGGCGCCCGCCGCCCAGGGCAACGGCGAAGAAGGCGGCAGTGCGCCCGCCGAGAGCGGCAATGGCGAAGGCGGTGACGC
CGGCGGCGACAGCGGAGAAGGTGGCGGCGAAGGCGGCGAGGACTGGGGCGAATACGGCCGCAGCGGCAGCGGCGGCGGCG
AGGAGGAGGACGGCCGCCCGCAGCTGGAGGCGAGCCCCGTCACCCTGCGCGAACATTTGATGGAACAGGTGCGCATGACG
TGCTGCGCGGCGCGCGACTGCGCGCTCGTGGAGCTCGTCGTCGATGCGCTCGACGACAACGGCTATCTGGAAGAACCGCT
GGAAGACATCCACGCGCGCCTGCCGGAAGAACTGGAAATCGAGTTCGAGGAATTGCGCACGGCGCTCGCTCTCGTGCAAA
GCATGGACCCGCCCGGCGTGGGCGCGCGCAGCGCGGCCGAATGCCTGGCCCTGCAGATCCGCCGCATGCCCGGTGTGCCG
ATGGTCACGCGGCGCATGGCGCTCGTCATCGTCGAAAAATACCTGACGTGGTTCGCGCAGCGCGAATTCAACAAGCTGAA
GAAGGCGCTCGATTGCGACGACGAAGACCTGCGCGAAGCCCAGGCCGTCATCCGCCAGTGCAATCCGCATCCGGGCGCGG
CGTTCGCGTCGGACGTGTCGGACTTCGTGGTTCCCGACGTGATCGTGCGCCGCGCCAAGGATGGCTGGAGCGTGCAACTG
AATCCGGAAGTGATGCCGCGCCTGCGCGTGAACAGCCTGTACGCCTCGCTGATGAAGCAGGGCAAATCGGAAACGCAGAT
GAACGCGCAGTTGCAGGAAGCCAAGTGGCTCATCAAGAACATGCGCCAGCGCTTCGACACGATCCTCCGTGTAGCTCAGG
CAATTGTCGATCGCCAGCGCAACTTTTTTTCCCATGGCGCAGTCGCGATGCGGCCCCTTGTTTTACGTGAGATAGCTGAT
ACACTAGGTCTACACGAGAGCACAATTTCTCGAGTCACAACTCAGAAATATATGCTGACCCCGCACGGCATGTTCGAGTT
GAAGTATTTCTTCGGGAGTCACGTTGCCACCGAAGCGGGAGGCGAAGCATCGTCGACGGCAATACGGGCACTCATCGTTC
AACTGACAGGAGCAGAAGACCCCAAGAACCCTTTATCCGACAGCAAGATCGCGGAGATGCTAGGGGAACAGGGAATGGTT
ATCGCGCGACGCACGGTTGCGAAGTACCGTGAGGCGCTGAAGATCCCACCCGTTAGTCTCCGCAAATCCCTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(346-502)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.647

100

0.583